CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74115	Canola	plastid	99.14	99.14
Bra001177.1-P	Field mustard	plastid	98.85	98.85
AT3G05970.1	Thale cress	plastid	93.97	93.3
CDY27725	Canola	plastid	91.38	92.58
CDY05217	Canola	plastid	91.38	92.58
CDX92843	Canola	peroxisome	24.86	80.84
VIT_05s0020g03080.t01	Wine grape	peroxisome	78.74	78.62
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	76.01	76.01
KRG91264	Soybean	peroxisome	76.15	75.93
CDX80638	Canola	peroxisome	73.42	73.1
CDX86151	Canola	peroxisome	73.28	72.96
TraesCS4B01G133700.3	Wheat	peroxisome	72.41	72.41
EES15543	Sorghum	peroxisome	70.83	72.29
TraesCS4D01G128700.3	Wheat	mitochondrion	72.27	72.27
TraesCS4A01G184900.2	Wheat	peroxisome	72.27	72.27
Zm00001d023238_P002	Maize	plasma membrane	71.7	72.21
TraesCS5B01G131800.3	Wheat	peroxisome	72.56	71.94
TraesCS5A01G133200.2	Wheat	peroxisome	72.27	71.65
TraesCS5D01G141300.1	Wheat	peroxisome	72.13	71.51
Os12t0143900-01	Rice	peroxisome	72.56	71.43
Os11t0147000-01	Rice	peroxisome	71.84	70.52
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	69.97	69.97
KXG27718	Sorghum	peroxisome	69.83	69.73
HORVU5Hr1G040740.17	Barley	peroxisome	70.83	68.95
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	70.55	65.47
CDY65251	Canola	peroxisome	20.83	61.97
PGSC0003DMT400063438	Potato	peroxisome	7.76	58.7
KRH13185	Soybean	cytosol	38.22	42.56
CDY68722	Canola	peroxisome	17.24	42.25
CDX80092	Canola	mitochondrion, peroxisome	17.53	41.64
CDY69216	Canola	peroxisome	22.84	38.59
CDY59237	Canola	peroxisome	36.49	38.14
CDY29350	Canola	peroxisome	36.49	38.14
CDY51419	Canola	peroxisome	35.78	37.73
CDY27501	Canola	peroxisome	35.78	37.73
CDX80093	Canola	peroxisome	23.28	37.59
CDY37793	Canola	peroxisome	23.28	37.59
CDY47618	Canola	peroxisome	35.92	37.48
CDX86825	Canola	peroxisome	35.78	37.39
CDY03515	Canola	peroxisome	35.78	37.33
CDY25270	Canola	peroxisome	33.91	35.81
CDX94232	Canola	peroxisome	33.91	35.7
CDY72011	Canola	peroxisome	10.49	34.6
CDY40856	Canola	peroxisome	35.78	33.97
CDY71490	Canola	extracellular, peroxisome	7.33	33.12
CDX95713	Canola	peroxisome	32.33	32.85
CDY46530	Canola	peroxisome	36.35	32.19
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	31.9	32.03
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	31.75	31.89
CDY66248	Canola	peroxisome	31.9	30.79
CDY15082	Canola	peroxisome	31.61	30.73
CDY64879	Canola	peroxisome	36.49	26.46
CDY67321	Canola	plastid	23.99	23.26
CDY01190	Canola	plastid	23.71	22.95
CDY12731	Canola	plastid	23.56	22.62
CDY53212	Canola	plastid	23.85	22.19

Protein Annotations

EnsemblPlants:CDY49993	EnsemblPlantsGene:GSBRNA2T00094195001	Gene3D:3.40.50.12780	GO:A0A078ILR6	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17
PFAM:PF00501	ProteinID:CDY49993	ProteinID:CDY49993.1	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801
UniParc:UPI0004EF2C17	UniProt:A0A078ILR6	MapMan:5.7.3.1	:	:	:

Description

BnaC03g34500DBnaC03g34500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILR6]

Coordinates

chrLK032873:-:61910..67168

Molecular Weight (calculated)

76247.2 Da

IEP (calculated)

7.725

GRAVY (calculated)

-0.090

Length

696 amino acids

Sequence
(BLAST)

001: MDSTSAARRR INAIHSHLVT SSRSSPLLLS SNPTAGEFYL DNGYSVVLPE KLSTGKWHVY RSARSPFKLV SRFPDHPDIA TLHDNFEHAV HDFRDYKYLG
101: TRVRVDGTVG DYKWMTYGEV GTARTALGSG LVHHGITTGS SVGIYFINRP EWLIVDQACA SYSYVSVPLY DTLGPDAVKF IVNHANVQAI FCVAETLNSL
201: LSGLSEMPSV RLVVVVGGLN ESLPSLPPSA GVKVVSYSVL LNQGRSNPQP FCPPKPDDVA TLCYTSGTTG TPKGVVLTHA NLIANVAGSS FSVKFFSSDI
301: YISYLPLAHI YERANQILAV YFGVAVGFYQ GDNMKLLDDL AALRPTVFSS VPRLYNRIYD GITNAVKTSG GLKERLFNAA YNAKKQALLT GKSASPIWDR
401: LVFNKIKDRL GGRVRFMTSG ASPLSPEVLE FLKICFGGRV SEGYGMTETS CVISGMDEGD NLTGHVGSPN PACEVKLVDV PEMNYTSADE PHPRGEICVR
501: GPIIFRGYYK DEVQTREVID EDGWLHTGDI GLWLPGGRLK IIDRKKNIFK LAQGEYIAPE KIENVYAKCR FVGQCFIYGD SFNSSLVAVV SVDPDVLKSW
601: AASEGIKGEL RELCNNPRVK AAVLSDMDAV GRESQLRGFE FAKAVTLVLE PFTLENGLLT PTFKIKRPQA KEYFAEAITN MYKELAASDP TANKAL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.