CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
mitochondrion 2
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	mitochondrion
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80093	Canola	peroxisome	100.0	95.59
CDY37793	Canola	peroxisome	100.0	95.59
CDY68722	Canola	peroxisome	57.52	83.45
CDX80092	Canola	mitochondrion, peroxisome	58.01	81.57
CDY51419	Canola	peroxisome	82.77	51.67
CDY27501	Canola	peroxisome	82.77	51.67
Zm00001d010943_P001	Maize	peroxisome	17.23	50.35
CDX95713	Canola	peroxisome	80.58	48.47
KRH69184	Soybean	peroxisome	67.48	42.12
KRH31765	Soybean	peroxisome	67.23	41.97
KRH68292	Soybean	endoplasmic reticulum	66.26	41.24
KRG96554	Soybean	peroxisome	66.26	41.24
VIT_07s0005g01790.t01	Wine grape	peroxisome	64.32	40.03
GSMUA_Achr8P10780_001	Banana	peroxisome	63.35	39.31
Os05t0132100-02	Rice	plasma membrane	63.11	38.86
Zm00001d024723_P001	Maize	peroxisome	63.11	38.81
PGSC0003DMT400023374	Potato	peroxisome	62.14	38.73
KXG21217	Sorghum	peroxisome	62.38	38.36
TraesCS1B01G093600.1	Wheat	peroxisome	62.38	38.36
TraesCS1A01G075000.1	Wheat	golgi	62.14	38.21
TraesCS1D01G077600.1	Wheat	golgi	61.89	38.06
KRH66241	Soybean	peroxisome	31.31	36.65
CDX92843	Canola	peroxisome	18.69	35.98
HORVU1Hr1G016200.16	Barley	peroxisome	62.62	33.08
CDX86825	Canola	peroxisome	48.79	30.18
CDY47618	Canola	peroxisome	48.79	30.13
CDY03515	Canola	peroxisome	48.54	29.98
CDX94232	Canola	peroxisome	46.84	29.2
CDY25270	Canola	peroxisome	46.6	29.14
CDY59237	Canola	peroxisome	45.39	28.08
CDY29350	Canola	peroxisome	44.9	27.78
CDY40856	Canola	peroxisome	49.03	27.56
CDY65251	Canola	peroxisome	15.05	26.5
CDY46530	Canola	peroxisome	48.79	25.57
CDY05217	Canola	plastid	38.84	23.29
CDY27725	Canola	plastid	38.59	23.14
CDX74115	Canola	plastid	38.59	22.84
CDY49993	Canola	mitochondrion	38.59	22.84
CDX86151	Canola	peroxisome	38.11	22.46
CDX80638	Canola	peroxisome	37.86	22.32
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	35.92	21.36
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	35.92	21.36
CDY64879	Canola	peroxisome	49.27	21.15
CDY15082	Canola	peroxisome	34.71	19.97
CDY66248	Canola	peroxisome	34.47	19.69
CDY67321	Canola	plastid	27.67	15.88
CDY01190	Canola	plastid	26.46	15.16
CDY53212	Canola	plastid	27.18	14.97
CDY12731	Canola	plastid	26.21	14.9
CDY71490	Canola	extracellular, peroxisome	0.73	1.95
CDY72011	Canola	peroxisome	0.73	1.42

Protein Annotations

EnsemblPlants:CDY69216	EnsemblPlantsGene:GSBRNA2T00084217001	Gene3D:3.40.50.12780	GO:A0A078JUE5	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF6
PFAM:PF00501	PFAM:PF13193	ProteinID:CDY69216	ProteinID:CDY69216.1	SEG:seg	SUPFAM:SSF56801
UniParc:UPI0004EF10C0	UniProt:A0A078JUE5	MapMan:50.6.2	:	:	:

Description

BnaCnng62450DBnaCnng62450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUE5]

Coordinates

chrLK038885:+:809..3149

Molecular Weight (calculated)

46990.8 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.186

Length

412 amino acids

Sequence
(BLAST)

001: SCFSLGLKTT SYCQMTPDDV YLSFLPLAHI LDRANEEYFF RNGASVGYYH GDLNALHNDI QELKPTFIAG VPRVFERIYE GIQKALQELN PRRRLIFYAL
101: YKYKLAWMNR GYSHSKASPM ADFIAFRKIR NQLGGRLRLL VSGGAPLSPE IEEFLRVTSC CFVIQGYGLT ETLGGTTLGY PDEMCMLGTV GVPALYNEIR
201: LEEVSEMGYD PLGENPAGEI CIRGKCLFSG YYKNPRLTEE VMKDGWFHTG DIGEILPNGV LRIIDRKKNL IKLSQGEYVA LEHLESIYGQ NPIVQDIWVY
301: GDSFKSMLVA VIVPNPETVN RWANDFGFIK PFEELCSISE LQEHILLELK STAEKHKLSK FEYIKAVTVE AKSFDIERGL VTATLKNQRK NLLKFYQVEI
401: EEMYRILASK RS

Best Arabidopsis Sequence Match ( AT2G47240.1 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.