CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51419	Canola	peroxisome	98.03	98.03
AT2G47240.2	Thale cress	peroxisome	91.21	91.21
CDY68722	Canola	peroxisome	38.94	90.49
CDX80092	Canola	mitochondrion, peroxisome	39.85	89.76
CDY72011	Canola	peroxisome	27.73	86.73
CDY69216	Canola	peroxisome	51.67	82.77
CDY37793	Canola	peroxisome	51.97	79.58
CDX80093	Canola	peroxisome	51.97	79.58
CDY71490	Canola	extracellular, peroxisome	18.48	79.22
CDX95713	Canola	peroxisome	81.97	78.98
KRH68292	Soybean	endoplasmic reticulum	68.48	68.28
KRG96554	Soybean	peroxisome	68.03	67.82
KRH69184	Soybean	peroxisome	66.36	66.36
KRH31765	Soybean	peroxisome	65.76	65.76
VIT_07s0005g01790.t01	Wine grape	peroxisome	65.15	64.95
GSMUA_Achr8P10780_001	Banana	peroxisome	62.42	62.05
PGSC0003DMT400023374	Potato	peroxisome	61.97	61.88
KXG21217	Sorghum	peroxisome	61.67	60.75
TraesCS1B01G093600.1	Wheat	peroxisome	61.52	60.6
Zm00001d024723_P001	Maize	peroxisome	61.36	60.45
TraesCS1A01G075000.1	Wheat	golgi	61.21	60.3
TraesCS1D01G077600.1	Wheat	golgi	61.06	60.15
Os05t0132100-02	Rice	plasma membrane	60.3	59.49
KRH66241	Soybean	peroxisome	28.64	53.69
HORVU1Hr1G016200.16	Barley	peroxisome	61.36	51.92
Zm00001d010943_P001	Maize	peroxisome	11.06	51.77
CDX86825	Canola	peroxisome	48.79	48.35
CDY47618	Canola	peroxisome	48.79	48.28
CDY03515	Canola	peroxisome	48.64	48.13
CDX94232	Canola	peroxisome	45.15	45.08
CDY25270	Canola	peroxisome	44.85	44.92
CDY59237	Canola	peroxisome	45.0	44.59
CDY29350	Canola	peroxisome	44.55	44.14
CDY40856	Canola	peroxisome	48.79	43.93
CDY46530	Canola	peroxisome	49.85	41.86
CDY27725	Canola	plastid	38.03	36.54
CDY05217	Canola	plastid	38.03	36.54
CDX92843	Canola	peroxisome	11.82	36.45
CDX74115	Canola	plastid	37.73	35.78
CDY49993	Canola	mitochondrion	37.73	35.78
CDY64879	Canola	peroxisome	50.3	34.58
CDX86151	Canola	peroxisome	35.61	33.62
CDX80638	Canola	peroxisome	35.45	33.48
CDY65251	Canola	peroxisome	11.21	31.62
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	31.52	30.01
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	31.52	30.01
CDY15082	Canola	peroxisome	30.3	27.93
CDY66248	Canola	peroxisome	30.3	27.74
CDY67321	Canola	plastid	24.85	22.84
CDY53212	Canola	plastid	24.7	21.79
CDY01190	Canola	plastid	23.48	21.56
CDY12731	Canola	plastid	22.88	20.83

Protein Annotations

EnsemblPlants:CDY27501	EnsemblPlantsGene:GSBRNA2T00038172001	Gene3D:3.40.50.12780	GO:A0A078GQB5	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF6
PFAM:PF00501	ProteinID:CDY27501	ProteinID:CDY27501.1	ScanProsite:PS00455	SUPFAM:SSF56801	UniParc:UPI0004EE276D
UniProt:A0A078GQB5	MapMan:50.6.2	:	:	:	:

Description

BnaC04g51420DBnaC04g51420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQB5]

Coordinates

chrLK032205:-:337538..343331

Molecular Weight (calculated)

74501.1 Da

IEP (calculated)

6.725

GRAVY (calculated)

-0.221

Length

660 amino acids

Sequence
(BLAST)

001: MKSFAAKVED GVRGENGKPS VGPVYRNLLS EKGFPPIDSD ITTAWDIFSK SVKKFPDNKM LGWRRIVDEK VGPYMWKTYK EAYDEVLQIG SALRAIGAEP
101: GCRVGIYGVN CPQWIITMEA CAAHTLICVP LYDTLGSGAV DYIVDQAEID FVFVQETKIK GLLEPDCKCA RRLKAIVSFT NVSEEHNLKG SEVGVKTYSW
201: LDFLQMGCGK PEETTPPKPF NICTIMYTSG TSGDPKGVVL THEAVATYIV GMDLFMDQFE DKMTHEDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGD
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFGKIRDK LGGRIRLLVS GGAPLSTEIE
401: EFLRVTCCCF VVQGYGLTET LGGTAMGFPD EMCMLGTVGI PAVYNEIRLE EVAEMGYDPL GENPAGEICI RGKCLFSGYY KNPKLTQEVM KDGWFHTGDI
501: GEIQSNGVLK IIDRKKNLIK LSQGEYVALE NLENIYGQNS LVQDIWVYGD SFKSMLVAVI VPNQETIKRW AKELGFTKPF EELCSLSELQ EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVARDLVT ATLKNRRNNL LKYYQVQVDE MYRKLASKKI

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.