CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, peroxisome
Any Predictor:	mitochondrion, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	peroxisome
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68722	Canola	peroxisome	94.2	97.18
CDY69216	Canola	peroxisome	81.57	58.01
CDX80093	Canola	peroxisome	81.57	55.45
CDY37793	Canola	peroxisome	81.57	55.45
Zm00001d010943_P001	Maize	peroxisome	25.6	53.19
CDY51419	Canola	peroxisome	90.1	40.0
Bra004467.1-P	Field mustard	peroxisome	94.88	39.89
CDY27501	Canola	peroxisome	89.76	39.85
AT2G47240.2	Thale cress	peroxisome	89.08	39.55
CDX95713	Canola	peroxisome	86.01	36.79
KRH69184	Soybean	peroxisome	66.89	29.7
KRH68292	Soybean	endoplasmic reticulum	66.55	29.46
KRH31765	Soybean	peroxisome	66.21	29.39
KRG96554	Soybean	peroxisome	65.87	29.15
CDX92843	Canola	peroxisome	20.48	28.04
PGSC0003DMT400023374	Potato	peroxisome	61.09	27.08
VIT_07s0005g01790.t01	Wine grape	peroxisome	60.07	26.59
KRH66241	Soybean	peroxisome	31.74	26.42
Zm00001d024723_P001	Maize	peroxisome	60.41	26.42
Os05t0132100-02	Rice	plasma membrane	60.07	26.31
GSMUA_Achr8P10780_001	Banana	peroxisome	59.04	26.05
KXG21217	Sorghum	peroxisome	59.39	25.97
TraesCS1B01G093600.1	Wheat	peroxisome	58.36	25.52
TraesCS1A01G075000.1	Wheat	golgi	58.02	25.37
TraesCS1D01G077600.1	Wheat	golgi	57.68	25.22
CDX86825	Canola	peroxisome	54.61	24.02
CDY47618	Canola	peroxisome	53.58	23.54
CDY03515	Canola	peroxisome	53.24	23.39
CDX94232	Canola	peroxisome	52.22	23.15
CDY25270	Canola	peroxisome	51.54	22.91
HORVU1Hr1G016200.16	Barley	peroxisome	58.7	22.05
CDY59237	Canola	peroxisome	49.83	21.92
CDY40856	Canola	peroxisome	54.61	21.83
CDY29350	Canola	peroxisome	49.49	21.77
CDY46530	Canola	peroxisome	53.92	20.1
CDY05217	Canola	plastid	42.32	18.05
CDY27725	Canola	plastid	42.32	18.05
CDY65251	Canola	peroxisome	14.33	17.95
CDX74115	Canola	plastid	41.64	17.53
CDY49993	Canola	mitochondrion	41.64	17.53
CDX86151	Canola	peroxisome	40.96	17.17
CDX80638	Canola	peroxisome	40.61	17.02
CDY64879	Canola	peroxisome	54.61	16.67
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	38.23	16.16
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	38.23	16.16
CDY15082	Canola	peroxisome	37.54	15.36
CDY66248	Canola	peroxisome	37.54	15.26
CDY67321	Canola	plastid	28.33	11.56
CDY01190	Canola	plastid	26.96	10.99
CDY53212	Canola	plastid	27.99	10.96
CDY12731	Canola	plastid	26.62	10.76
CDY72011	Canola	peroxisome	1.71	2.37
CDY71490	Canola	extracellular, peroxisome	1.02	1.95

Protein Annotations

EnsemblPlants:CDX80092	EnsemblPlantsGene:GSBRNA2T00132989001	Gene3D:3.40.50.12780	GO:A0A078CTN2	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF6	PFAM:PF00501
ProteinID:CDX80092	ProteinID:CDX80092.1	SEG:seg	SUPFAM:SSF56801	UniParc:UPI0004EE8006	MapMan:35.1

Description

BnaA05g00640D

Coordinates

chrLK031819:+:1780817..1785759

Molecular Weight (calculated)

33123.4 Da

IEP (calculated)

5.144

GRAVY (calculated)

-0.148

Length

293 amino acids

Sequence
(BLAST)

001: MLSRLGHDLI RDKLGGRIRL LISGGAPLSP EIEEFLRVTC CCFVLQGYGL TETLGGTALC VPDEMCMLGT VGIPAVYNEI RLEEVAEMGY DPLGENPAGE
101: ICIRGKCLFS GYYKNPELTD EVLKDGWFHT GDIGEIQPNG VLKIIDRKKN LIKLSQGEYV ALENLENIYG QNSLVQEIWV YGDSFKSMLV AVIVPNPEVV
201: NRWAKDLGLN KPFEELCSLT ELQEHIILEL KSTAEKNKLK RFEYIKAVTV EIKPFDLERD LVTATLKNKR NNLLKYYQVQ VDEMYRKLAS KKI

Best Arabidopsis Sequence Match ( AT1G64400.1 )
(BLAST)

001: MATGRYIVEV EKGKQGVDGG SPSVGPVYRS IYAKDGFPEP PDDLVSAWDI FRLSVEKSPN NPMLGRREIV DGKAGKYVWQ TYKEVHNVVI KLGNSIRTIG
101: VGKGDKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA GAIEFIICHA EVSLAFAEEN KISELLKTAP KSTKYLKYIV SFGEVTNNQR VEAERHRLTI
201: YSWDQFLKLG EGKHYELPEK RRSDVCTIMY TSGTTGDPKG VLLTNESIIH LLEGVKKLLK TIDEELTSKD VYLSYLPLAH IFDRVIEELC IYEAASIGFW
301: RGDVKILIED IAALKPTVFC AVPRVLERIY TGLQQKLSDG GFVKKKLFNF AFKYKHKNME KGQPHEQASP IADKIVFKKV KEGLGGNVRL ILSGAAPLAA
401: HIESFLRVVA CAHVLQGYGL TESCGGTFVS IPNELSMLGT VGPPVPNVDI RLESVPEMGY DALASNPRGE ICIRGKTLFS GYYKREDLTQ EVFIDGWLHT
501: GDVGEWQPDG AMKIIDRKKN IFKLSQGEYV AVENLENIYS HVAAIESIWV YGNSYESYLV AVVCPSKIQI EHWAKEHKVS GDFESICRNQ KTKEFVLGEF
601: NRVAKDKKLK GFELIKGVHL DTVPFDMERD LITPSYKMKR PQLLKYYQKE IDEMYKKNRE VQLRV

Arabidopsis Description

LACS3Long chain acyl-CoA synthetase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7W4]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.