CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27725	Canola	plastid	98.84	98.84
CDX74115	Canola	plastid	93.01	91.81
CDY49993	Canola	mitochondrion	92.58	91.38
CDX92843	Canola	peroxisome	27.07	86.92
VIT_05s0020g03080.t01	Wine grape	peroxisome	77.58	76.47
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	75.25	74.28
KRG91264	Soybean	peroxisome	75.4	74.21
CDX80638	Canola	peroxisome	72.78	71.53
EES15543	Sorghum	peroxisome	70.89	71.41
CDX86151	Canola	peroxisome	72.49	71.24
TraesCS4B01G133700.3	Wheat	peroxisome	72.05	71.12
TraesCS4D01G128700.3	Wheat	mitochondrion	71.91	70.98
TraesCS4A01G184900.2	Wheat	peroxisome	71.91	70.98
Zm00001d023238_P002	Maize	plasma membrane	71.32	70.91
TraesCS5B01G131800.3	Wheat	peroxisome	71.91	70.37
TraesCS5A01G133200.2	Wheat	peroxisome	71.91	70.37
Os12t0143900-01	Rice	peroxisome	72.34	70.3
TraesCS5D01G141300.1	Wheat	peroxisome	71.76	70.23
Os11t0147000-01	Rice	peroxisome	71.47	69.25
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	69.43	68.53
KXG27718	Sorghum	peroxisome	69.43	68.44
HORVU5Hr1G040740.17	Barley	peroxisome	70.01	67.27
CDY65251	Canola	peroxisome	22.56	66.24
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	70.45	64.53
PGSC0003DMT400063438	Potato	peroxisome	8.15	60.87
CDY68722	Canola	peroxisome	17.76	42.96
KRH13185	Soybean	cytosol	38.86	42.72
CDX80092	Canola	mitochondrion, peroxisome	18.05	42.32
CDY69216	Canola	peroxisome	23.29	38.84
CDY51419	Canola	peroxisome	36.54	38.03
CDY27501	Canola	peroxisome	36.54	38.03
CDX80093	Canola	peroxisome	23.73	37.82
CDY37793	Canola	peroxisome	23.73	37.82
CDY47618	Canola	peroxisome	36.54	37.63
CDX86825	Canola	peroxisome	36.39	37.54
CDY03515	Canola	peroxisome	36.39	37.48
CDY29350	Canola	peroxisome	36.1	37.24
CDY59237	Canola	peroxisome	36.1	37.24
CDY25270	Canola	peroxisome	34.06	35.51
CDX94232	Canola	peroxisome	34.06	35.4
CDY72011	Canola	peroxisome	10.48	34.12
CDY40856	Canola	peroxisome	36.39	34.11
CDY71490	Canola	extracellular, peroxisome	7.42	33.12
CDX95713	Canola	peroxisome	32.9	32.99
CDY46530	Canola	peroxisome	37.12	32.44
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	32.31	32.03
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	32.17	31.89
CDY66248	Canola	peroxisome	33.19	31.62
CDY15082	Canola	peroxisome	32.9	31.56
CDY64879	Canola	peroxisome	37.26	26.67
CDY67321	Canola	plastid	24.02	22.98
CDY01190	Canola	plastid	23.29	22.25
CDY12731	Canola	plastid	23.29	22.07
CDY53212	Canola	plastid	23.87	21.93

Protein Annotations

EnsemblPlants:CDY05217	EnsemblPlantsGene:GSBRNA2T00120026001	Gene3D:3.40.50.12780	GO:A0A078EW83	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17
PFAM:PF00501	ProteinID:CDY05217	ProteinID:CDY05217.1	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801
UniParc:UPI0004EEF527	MapMan:5.7.3.1	:	:	:	:

Description

BnaC05g45860D

Coordinates

chrLK031960:-:399362..404811

Molecular Weight (calculated)

75323.1 Da

IEP (calculated)

7.736

GRAVY (calculated)

-0.104

Length

687 amino acids

Sequence
(BLAST)

001: MDSSSAARRR INSIHSHLVT SSRSSPLIRS NPTAGEFCLD NGYSVALPEK LSTGDWNVYR SARSPFKLVS RFPDHPDIAT LHDNFEHAIH DFRDYKYLGT
101: RVRVDGTVGD YKWMTYGEVG TARTALGSGL VHHGIPSGST VGIYFINRPE WLIVDHACSA YSYVSVPLYD TLGPDAVQFI VNHANVQAIF CVAETLNSLL
201: SGLSEMPSVR LVVVVGGLNE SLPSLPASAG VKVVSYSVLL NQGRSKPQPF VPPKPDDVAT ICYTSGTTGT PKGVVLTHAN LISNVAGSSF SVKFFSSDIY
301: ISYLPLAHIY ERSNQILTVY FGVAVGFYQG DNMKLLDDLA ALRPTVFSSV PRLYNRIYDG ITNAVKSSGG LKERLFNAAY NAKKQALLNG KNASAIWDRL
401: VFNKIKDKLG GRVRFMTSGA SPLSPEVMEF MKICFGARVL EGYGMTETAC VISGMDEGDN LIGHVGSPNP ACEIKLVDVP EMNYTSADQP NPRGEICVRG
501: PIVFRGYYKD EVQTKEVVDE DGWLHTGDIG LWLPGGRLQI IDRKKNIFKL AQGEYIAPEK IENVYAKCKF VGQCFIYGDS FNSSLVAVVS VDPDVLKSWA
601: ASQGIKHGDP RELCNNPRVK AAVVSDMDTL RGFEFAKAVT LVLEPFTLEN GLLTPTLKIK RPQAKEYFAE AITNMYKELA ASDPTHR

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.