CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80093	Canola	peroxisome	100.0	100.0
CDY69216	Canola	peroxisome	95.59	100.0
CDY68722	Canola	peroxisome	54.99	83.45
CDX80092	Canola	mitochondrion, peroxisome	55.45	81.57
CDY51419	Canola	peroxisome	79.58	51.97
CDY27501	Canola	peroxisome	79.58	51.97
Zm00001d010943_P001	Maize	peroxisome	16.47	50.35
CDX95713	Canola	peroxisome	77.49	48.76
KRH69184	Soybean	peroxisome	64.97	42.42
KRH31765	Soybean	peroxisome	64.73	42.27
KRH68292	Soybean	endoplasmic reticulum	63.81	41.54
KRG96554	Soybean	peroxisome	63.81	41.54
VIT_07s0005g01790.t01	Wine grape	peroxisome	62.18	40.48
GSMUA_Achr8P10780_001	Banana	peroxisome	61.48	39.91
Zm00001d024723_P001	Maize	peroxisome	61.02	39.25
PGSC0003DMT400023374	Potato	peroxisome	59.86	39.03
Os05t0132100-02	Rice	plasma membrane	60.56	39.01
TraesCS1B01G093600.1	Wheat	peroxisome	60.32	38.81
KXG21217	Sorghum	peroxisome	60.32	38.81
TraesCS1A01G075000.1	Wheat	golgi	60.09	38.66
TraesCS1D01G077600.1	Wheat	golgi	59.86	38.51
KRH66241	Soybean	peroxisome	30.39	37.22
CDX92843	Canola	peroxisome	17.87	35.98
HORVU1Hr1G016200.16	Barley	peroxisome	60.56	33.46
CDY47618	Canola	peroxisome	47.1	30.43
CDX86825	Canola	peroxisome	46.87	30.33
CDY03515	Canola	peroxisome	46.87	30.28
CDX94232	Canola	peroxisome	45.01	29.35
CDY25270	Canola	peroxisome	44.78	29.29
CDY59237	Canola	peroxisome	43.62	28.23
CDY29350	Canola	peroxisome	43.16	27.93
CDY40856	Canola	peroxisome	47.1	27.69
CDY65251	Canola	peroxisome	14.39	26.5
CDY46530	Canola	peroxisome	47.1	25.83
CDY27725	Canola	plastid	37.82	23.73
CDY05217	Canola	plastid	37.82	23.73
CDX74115	Canola	plastid	37.59	23.28
CDY49993	Canola	mitochondrion	37.59	23.28
CDX86151	Canola	peroxisome	36.89	22.75
CDX80638	Canola	peroxisome	36.66	22.6
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	34.8	21.64
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	34.8	21.64
CDY64879	Canola	peroxisome	47.56	21.35
CDY15082	Canola	peroxisome	33.41	20.11
CDY66248	Canola	peroxisome	33.18	19.83
CDY67321	Canola	plastid	26.45	15.88
CDY01190	Canola	plastid	25.29	15.16
CDY12731	Canola	plastid	25.29	15.03
CDY53212	Canola	plastid	25.99	14.97
CDY72011	Canola	peroxisome	1.16	2.37
CDY71490	Canola	extracellular, peroxisome	0.7	1.95

Protein Annotations

EnsemblPlants:CDY37793	EnsemblPlantsGene:GSBRNA2T00064729001	Gene3D:3.40.50.12780	GO:A0A078CYC7	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF6
PFAM:PF00501	PFAM:PF13193	ProteinID:CDY37793	ProteinID:CDY37793.1	SEG:seg	SUPFAM:SSF56801
UniParc:UPI0004EE6669	UniProt:A0A078CYC7	MapMan:50.6.2	:	:	:

Description

BnaC04g00320DBnaA05g00630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CYC7]

Coordinates

chrLK032408:+:290274..292994

Molecular Weight (calculated)

49014.1 Da

IEP (calculated)

6.328

GRAVY (calculated)

-0.215

Length

431 amino acids

Sequence
(BLAST)

001: MVGEDSTINQ SRSDSTINSS CFSLGLKTTS YCQMTPDDVY LSFLPLAHIL DRANEEYFFR NGASVGYYHG DLNALHNDIQ ELKPTFIAGV PRVFERIYEG
101: IQKALQELNP RRRLIFYALY KYKLAWMNRG YSHSKASPMA DFIAFRKIRN QLGGRLRLLV SGGAPLSPEI EEFLRVTSCC FVIQGYGLTE TLGGTTLGYP
201: DEMCMLGTVG VPALYNEIRL EEVSEMGYDP LGENPAGEIC IRGKCLFSGY YKNPRLTEEV MKDGWFHTGD IGEILPNGVL RIIDRKKNLI KLSQGEYVAL
301: EHLESIYGQN PIVQDIWVYG DSFKSMLVAV IVPNPETVNR WANDFGFIKP FEELCSISEL QEHILLELKS TAEKHKLSKF EYIKAVTVEA KSFDIERGLV
401: TATLKNQRKN LLKFYQVEIE EMYRILASKR S

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.