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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • nucleus 1
  • peroxisome 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:peroxisome
TargetP:mitochondrion
WoLF PSORT:peroxisome
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY11941
CDY20736
CDY36789
CDY49390
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G27600.1 CDY11941 AT5G56290.1 16256065
AT5G27600.1 CDY20736 AT5G56290.1 16256065
AT5G27600.1 CDY36789 AT5G56290.1 16256065
AT5G27600.1 CDY49390 AT5G56290.1 16256065
AT5G27600.1 CDY66434 AT5G56290.1 16256065
AT5G27600.1 CDY66435 AT5G56290.1 16256065
AT5G27600.1 CDY67858 AT5G56290.1 16256065
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009951.1-P Field mustard peroxisome 99.86 100.0
CDX80638 Canola peroxisome 98.43 98.43
AT5G27600.1 Thale cress peroxisome, plastid 86.41 86.29
Solyc01g099100.2.1 Tomato plastid 74.25 74.57
VIT_14s0128g00720.t01 Wine grape peroxisome 66.81 73.78
CDX74115 Canola plastid 73.25 73.56
CDY49993 Canola mitochondrion 72.96 73.28
CDY27725 Canola plastid 71.24 72.49
CDY05217 Canola plastid 71.24 72.49
EES15543 Sorghum peroxisome 69.81 71.55
Zm00001d023238_P002 Maize plasma membrane 70.67 71.49
CDX92843 Canola peroxisome 21.6 70.56
Os12t0143900-01 Rice peroxisome 71.24 70.44
Zm00001d052485_P001 Maize mitochondrion, peroxisome 69.96 70.26
TraesCS5B01G131800.3 Wheat peroxisome 70.53 70.23
TraesCS4A01G184900.2 Wheat peroxisome 69.67 69.97
TraesCS5A01G133200.2 Wheat peroxisome 70.1 69.8
TraesCS4D01G128700.3 Wheat mitochondrion 69.24 69.54
TraesCS5D01G141300.1 Wheat peroxisome 69.81 69.52
KXG27718 Sorghum peroxisome 69.24 69.44
TraesCS4B01G133700.3 Wheat peroxisome 69.1 69.4
Os11t0147000-01 Rice peroxisome 70.1 69.11
HORVU5Hr1G040740.17 Barley peroxisome 68.53 66.99
HORVU4Hr1G025820.9 Barley peroxisome, plastid 68.24 63.6
PGSC0003DMT400063438 Potato peroxisome 7.73 58.7
CDY65251 Canola peroxisome 18.31 54.7
CDY68722 Canola peroxisome 16.74 41.2
CDX80092 Canola mitochondrion, peroxisome 17.17 40.96
CDY47618 Canola peroxisome 36.77 38.53
CDY03515 Canola peroxisome 36.62 38.38
CDX86825 Canola peroxisome 36.34 38.14
CDY69216 Canola peroxisome 22.46 38.11
CDY29350 Canola peroxisome 35.34 37.09
CDX80093 Canola peroxisome 22.75 36.89
CDY37793 Canola peroxisome 22.75 36.89
CDY59237 Canola peroxisome 35.05 36.79
CDY51419 Canola peroxisome 34.05 36.06
CDX94232 Canola peroxisome 34.05 36.01
CDY25270 Canola peroxisome 33.76 35.81
CDY27501 Canola peroxisome 33.62 35.61
CDY40856 Canola peroxisome 36.48 34.79
CDY71490 Canola extracellular, peroxisome 7.44 33.77
CDX95713 Canola peroxisome 31.47 32.12
CDY72011 Canola peroxisome 9.59 31.75
CDY46530 Canola peroxisome 35.19 31.3
CDX79212 Canola endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole 30.9 31.17
CDX68052 Canola endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole 30.76 31.02
CDY66248 Canola peroxisome 30.47 29.54
CDY15082 Canola peroxisome 30.04 29.33
CDY64879 Canola peroxisome 35.34 25.73
CDY01190 Canola plastid 23.18 22.53
CDY12731 Canola plastid 23.32 22.48
CDY67321 Canola plastid 22.89 22.28
CDY53212 Canola plastid 22.75 21.26
Protein Annotations
EnsemblPlants:CDX86151EnsemblPlantsGene:GSBRNA2T00144209001Gene3D:2.30.38.10Gene3D:3.40.50.12780Gene3D:3.40.50.980GO:A0A078DA58
GO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152InterPro:AMP-binding_CSInterPro:AMP-dep_Synth/Lig
PANTHER:PTHR43272PANTHER:PTHR43272:SF17PFAM:PF00501ProteinID:CDX86151ProteinID:CDX86151.1ScanProsite:PS00455
SUPFAM:SSF56801UniParc:UPI0004EDEC50MapMan:5.7.3.1:::
Description
BnaA06g28680D
Coordinates
chrLK031845:-:54811..59281
Molecular Weight (calculated)
77027.3 Da
IEP (calculated)
7.147
GRAVY (calculated)
-0.142
Length
699 amino acids
Sequence
(BLAST)
001: MEFSSPAQRR LQTLRSHLDS SQADDQLSLF LNATASAAPF SNEDSYSVVL PEKLDTGIWN VHRSAKSPTK LFSRFPNHPE IGTLHDNFVH AVETYPDNKY
101: LGTRARPDGT IGEYTWMTYA ETASARQAIG SGLIYNGINH GACVGLYFIN RPEWLAVDHA CAAYSFISVP LYDTLGPDAV KFVVNHATLQ AIFCVPQTLN
201: TLLSFLSEIP TIRLVVVVGG ADENLPSLPP GSGVKIVSYQ KLLSQGRSSV HPFSPPKPED IATICYTSGT TGTPKGAMLS HENLISNVAG SSLSINFLPD
301: DIYISYLPLA HIYERSNQIM GVYGGVSIGF YQGDIMKLMD DLAVLRPTVF CSVPRLYNRV YDGITSAVKS SGVTKRRLFQ LAYNSKKKAI LNGRRSPSPL
401: WDKLVFNKIK EKLGGRVRFM GSGASPLSPD VMDFLRVCFG CSVREGYGMT ETSCVISSMD EGDNLSGHVG SPNPACEVKL VDVPEMNYTS EDQPYPRGEI
501: CVRGPIIFKG YYKDEEQTKE IMDVDGWLHT GDIGLWLPGG RLKIIDRKKN IFKLAQGEYI APEKIENVYT KCRFVSQCFI HGDSFNSSLV AIVAVDPDVM
601: KDWAASEGIK YENLAQLCKD PKVRKAVLAE MDIVGREAQL RGFEFAKAVT LVPEPFTLEN GLLTPTFKVK RPQAKAYFAE AISKMYAEIA SSDPVPSKL
Best Arabidopsis Sequence Match ( AT5G27600.1 )
(BLAST)
001: MEFASPEQRR LETIRSHIDT SPTNDQSSSL FLNATASSAS PFFKEDSYSV VLPEKLDTGK WNVYRSKRSP TKLVSRFPDH PEIGTLHDNF VHAVETYAEN
101: KYLGTRVRSD GTIGEYSWMT YGEAASERQA IGSGLLFHGV NQGDCVGLYF INRPEWLVVD HACAAYSFVS VPLYDTLGPD AVKFVVNHAN LQAIFCVPQT
201: LNILLSFLAE IPSIRLIVVV GGADEHLPSL PRGTGVTIVS YQKLLSQGRS SLHPFSPPKP EDIATICYTS GTTGTPKGVV LTHGNLIANV AGSSVEAEFF
301: PSDVYISYLP LAHIYERANQ IMGVYGGVAV GFYQGDVFKL MDDFAVLRPT IFCSVPRLYN RIYDGITSAV KSSGVVKKRL FEIAYNSKKQ AIINGRTPSA
401: FWDKLVFNKI KEKLGGRVRF MGSGASPLSP DVMDFLRICF GCSVREGYGM TETSCVISAM DDGDNLSGHV GSPNPACEVK LVDVPEMNYT SDDQPYPRGE
501: ICVRGPIIFK GYYKDEEQTR EILDGDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY TKCRFVSQCF IHGDSFNSSL VAIVSVDPEV
601: MKDWAASEGI KYEHLGQLCN DPRVRKTVLA EMDDLGREAQ LRGFEFAKAV TLVPEPFTLE NGLLTPTFKI KRPQAKAYFA EAISKMYAEI AASNPIPSKL
Arabidopsis Description
LACS7Long chain acyl-CoA synthetase 7, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LKS5]
SUBAcon: [peroxisome,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.