Factsheet for HORVU5Hr1G040740.17

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	endoplasmic reticulum, peroxisome
MultiLoc:	peroxisome
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G049220.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	HORVU7Hr1G049220.10	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G133200.2	Wheat	peroxisome	92.59	94.3
TraesCS5D01G141300.1	Wheat	peroxisome	92.45	94.16
TraesCS5B01G131800.3	Wheat	peroxisome	92.45	94.16
Os12t0143900-01	Rice	peroxisome	82.66	83.59
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	80.84	83.05
KXG27718	Sorghum	peroxisome	80.84	82.93
EES15543	Sorghum	peroxisome	79.02	82.84
Zm00001d023238_P002	Maize	plasma membrane	79.86	82.63
Os11t0147000-01	Rice	peroxisome	81.68	82.37
GSMUA_Achr8P24080_001	Banana	mitochondrion	71.19	74.85
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	76.78	73.2
VIT_05s0020g03080.t01	Wine grape	peroxisome	70.21	72.02
Solyc01g099100.2.1	Tomato	plastid	69.93	71.84
VIT_14s0128g00720.t01	Wine grape	peroxisome	63.36	71.56
CDX74115	Canola	plastid	69.09	70.98
Bra001177.1-P	Field mustard	plastid	69.09	70.98
CDY49993	Canola	mitochondrion	68.95	70.83
AT3G05970.1	Thale cress	plastid	69.37	70.76
KRG91264	Soybean	peroxisome	68.81	70.49
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	68.39	70.26
CDY27725	Canola	plastid	67.27	70.01
CDY05217	Canola	plastid	67.27	70.01
Bra020793.1-P	Field mustard	plastid	61.4	69.79
CDX92843	Canola	peroxisome	20.84	69.63
Bra009951.1-P	Field mustard	peroxisome	66.99	68.62
CDX86151	Canola	peroxisome	66.99	68.53
CDX80638	Canola	peroxisome	66.71	68.24
Solyc09g075790.2.1	Tomato	peroxisome	59.86	68.15
AT5G27600.1	Thale cress	peroxisome, plastid	66.15	67.57
Solyc09g075770.1.1	Tomato	peroxisome	62.8	64.33
PGSC0003DMT400063438	Potato	peroxisome	7.27	56.52
CDY65251	Canola	peroxisome	18.04	55.13
KRH13185	Soybean	cytosol	36.08	41.28
HORVU3Hr1G059140.1	Barley	peroxisome	35.94	39.06
HORVU5Hr1G099350.15	Barley	peroxisome	35.1	37.57
HORVU5Hr1G046950.26	Barley	peroxisome	35.38	37.15
HORVU7Hr1G024350.1	Barley	endoplasmic reticulum, vacuole	35.1	35.15
HORVU1Hr1G016200.16	Barley	peroxisome	33.71	30.9
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	28.53	29.23
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	28.11	28.84
HORVU5Hr1G052100.13	Barley	peroxisome	28.39	27.62
GSMUA_AchrUn_...	Banana	peroxisome	4.76	26.98
HORVU1Hr1G027510.1	Barley	cytosol	1.96	25.93
HORVU5Hr1G120850.1	Barley	plastid	21.54	22.48
HORVU1Hr1G032500.2	Barley	peroxisome	3.64	16.46

Protein Annotations

EnsemblPlants:HORVU5Hr1G040740.17	EnsemblPlantsGene:HORVU5Hr1G040740	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ncoils:Coil	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17
PFAM:PF00501	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	UniParc:UPI000B4691B2	UniProt:A0A287QXP1
MapMan:5.7.3.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:305105275..305126028

Molecular Weight (calculated)

78322.1 Da

IEP (calculated)

7.259

GRAVY (calculated)

-0.074

Length

715 amino acids

Sequence
(BLAST)

001: MEAMAREEEG PAAAMMDAAE RRLRVVSAHL EPQAGAAAGL AANPTAGEYA HVQGYSIVLP EKLQTGKWNV YRSAESPLRL INRFPATPDI GTLHDNFVYA
101: VETFTDCRYL GTRVCADGAV GDYKWMTYGE ASTSRTAIGS GLIYHGISEG ARIGLYFINR PEWIIIDHAC AAYSYISVPL YDTLGPDAVQ FIVNHATVEA
201: IFCVPQTLST LLSFLTQMPC VRLIVVVGGD NANTPSATVA AGVEIITYSS LHSQGKMSSQ TYRPPKPEDV ATICYTSGTT GTPKGAVLSH ENLIANVAGS
301: SLGVKFYPSD VYISYLPLAH IYERANQIAL LHYGVAIGFY QGDNLKLMDD LAALRPTVFA SVPRLYNRIY SAITNAVKDS GGLKERLFRT AYNAKRQALM
401: KGRNPSPMWD KLVFNKIKAR LGGRVRLMTS GASPLSADVM EFLRICFGGE VLEGYGMTET SCVITTMDIG DKLIGHVGSP NPSCEVKLVD VPEMNYTSDD
501: QPYPRGEICV RGPTIFRGYY KDEVQTRDVI DNDGWLHTGD IGLWLPGGRL KIIDRKKNIF KLAQGEYIAP EKIENVYAKC KFIAQCFIYG DSFNSFLVAI
601: VAVEPDVLKA WAASEGIQSE DLRQLCADPR AKAAVLADMD SIGKEAQLRG FEFAKAVTLV AEPFTVENGL LTPTFKVSKD RKLRPISRKN SQICMHNCVP
701: LNQLGRSCNY SSNVQ

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.