Factsheet for VIT_05s0020g03080.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 2
cytosol 1
peroxisome 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91264	Soybean	peroxisome	81.92	81.81
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	81.06	81.18
AT3G05970.1	Thale cress	plastid	80.06	79.6
CDX74115	Canola	plastid	78.62	78.74
CDY49993	Canola	mitochondrion	78.62	78.74
VIT_14s0128g00720.t01	Wine grape	peroxisome	71.45	78.67
Bra001177.1-P	Field mustard	plastid	78.48	78.59
CDY05217	Canola	plastid	76.47	77.58
Bra020793.1-P	Field mustard	plastid	70.01	77.58
CDY27725	Canola	plastid	76.33	77.44
EES15543	Sorghum	peroxisome	74.32	75.95
Zm00001d023238_P002	Maize	plasma membrane	75.04	75.69
TraesCS4A01G184900.2	Wheat	peroxisome	75.18	75.29
TraesCS4D01G128700.3	Wheat	mitochondrion	74.61	74.71
TraesCS4B01G133700.3	Wheat	peroxisome	74.61	74.71
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	74.32	74.43
CDX92843	Canola	peroxisome	22.81	74.3
TraesCS5B01G131800.3	Wheat	peroxisome	74.46	73.93
KXG27718	Sorghum	peroxisome	73.89	73.89
Os12t0143900-01	Rice	peroxisome	74.61	73.55
TraesCS5A01G133200.2	Wheat	peroxisome	73.74	73.22
Os11t0147000-01	Rice	peroxisome	74.32	73.06
TraesCS5D01G141300.1	Wheat	peroxisome	73.46	72.93
HORVU5Hr1G040740.17	Barley	peroxisome	72.02	70.21
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	73.89	68.67
PGSC0003DMT400063438	Potato	peroxisome	7.75	58.7
CDY65251	Canola	peroxisome	18.22	54.27
KRH13185	Soybean	cytosol	42.18	47.04
VIT_07s0005g01790.t01	Wine grape	peroxisome	36.87	38.82
VIT_03s0063g01880.t01	Wine grape	peroxisome	36.01	38.09
VIT_02s0025g01410.t01	Wine grape	peroxisome	36.15	38.07
VIT_12s0057g01270.t01	Wine grape	peroxisome	30.99	30.04
VIT_18s0001g02810.t01	Wine grape	vacuole	29.56	29.56
GSMUA_AchrUn_...	Banana	peroxisome	4.3	23.81
VIT_08s0032g00050.t01	Wine grape	plastid	24.25	23.15

Protein Annotations

EntrezGene:100244213	wikigene:100244213	Gene3D:3.40.50.12780	MapMan:5.7.3.1	EMBL:AM455683	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:CAN74451	ProteinID:CAN74451.1	ProteinID:CBI26222	ProteinID:CBI26222.3
UniProt:D7T6V1	EMBL:FN595749	GO:GO:0001676	GO:GO:0003674	GO:GO:0003824	GO:GO:0004467
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010193	GO:GO:0016020
EntrezGene:LOC100244213	wikigene:LOC100244213	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR43272
PANTHER:PTHR43272:SF17	SUPFAM:SSF56801	TIGR:TC59252	UniParc:UPI00019831E1	ArrayExpress:VIT_05s0020g03080	EnsemblPlantsGene:VIT_05s0020g03080
EnsemblPlants:VIT_05s0020g03080.t01	unigene:Vvi.9207	RefSeq:XP_002277936	RefSeq:XP_002277936.1	:	:

Description

No Description!

Coordinates

chr5:+:4804248..4828049

Molecular Weight (calculated)

76894.3 Da

IEP (calculated)

7.046

GRAVY (calculated)

-0.103

Length

697 amino acids

Sequence
(BLAST)

001: MESAPQRRLT AIQTQLIATA GDDRSHSQLL TNQTAGEFVS EQGYSVVLPE KLETGKWNVY RSAQSPLRLV SRFPDHPEIG TLHDNFVHSV ETFRDYKYLG
101: TRIRVDGTVG EYKWMTYGEA GTARSAIGSG LIYYGIPKGS CVGLYFINRP EWLIVDHACS AFSYVSVPLY DTLGPDAVKY IVNHAVLQAI FCVPQTLNSL
201: LSFLSEIPSV RLIVVVGGID DQMPSLPSTT GVEVVSYSKL LNQGRSRPQP FCPPKPDDVA TICYTSGTTG TPKGAVLSHG NLIANVAGAT LSVKFYPSDV
301: YISYLPLAHI YERANQVMTA YFGVAVGFYQ GDNLKLMDDM AALRPTIFCS VPRLYNRIYA GITNAVKTSG VLRERLFNAA YNAKKRAILS GKNPSPMWDR
401: LVFNKIKEKL GGRVRFMVSG ASPLSPDVME FLRICFGGRI TEGYGMTETS CVISSMDESD NLTGHVGSPN PACEVKLVDV PEMNYTSEDQ PYPRGEICVR
501: GPILFLGYHK DEVQTREVID EDGWLHTGDI GLWLPGGRLK IIDRKKNIFK LAQGEYIAPE KIENVYAKCK FVAQCFVYGD SMNSSLVAIV SVDPDVLKAW
601: AASEGIQYQD LGQLCNDPRV RAAVLADMDV VGREAKLRGF EFAKAVTLVL EPFTMDNDLL TPTFKIKRPQ AKAYFANAIS NMYAELSTSD PSPQSKL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.