Factsheet for HORVU4Hr1G025820.9

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 2
mitochondrion 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plastid
Any Predictor:	mitochondrion, peroxisome, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
TargetP:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G049220.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	HORVU7Hr1G049220.10	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G184900.2	Wheat	peroxisome	88.0	94.83
TraesCS4B01G133700.3	Wheat	peroxisome	87.6	94.4
TraesCS4D01G128700.3	Wheat	mitochondrion	87.33	94.11
HORVU5Hr1G040740.17	Barley	peroxisome	73.2	76.78
VIT_05s0020g03080.t01	Wine grape	peroxisome	68.67	73.89
GSMUA_Achr8P24080_001	Banana	mitochondrion	66.27	73.09
Solyc01g099100.2.1	Tomato	plastid	67.6	72.84
Solyc09g075790.2.1	Tomato	peroxisome	59.73	71.34
Bra001177.1-P	Field mustard	plastid	65.87	70.98
CDX74115	Canola	plastid	65.73	70.83
AT3G05970.1	Thale cress	plastid	66.13	70.76
CDY49993	Canola	mitochondrion	65.47	70.55
CDY05217	Canola	plastid	64.53	70.45
KRG91264	Soybean	peroxisome	65.47	70.34
CDY27725	Canola	plastid	64.4	70.31
Bra020793.1-P	Field mustard	plastid	58.93	70.27
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	64.93	69.97
VIT_14s0128g00720.t01	Wine grape	peroxisome	58.8	69.67
AT5G27600.1	Thale cress	peroxisome, plastid	64.4	69.0
CDX80638	Canola	peroxisome	63.73	68.38
Bra009951.1-P	Field mustard	peroxisome	63.6	68.34
CDX86151	Canola	peroxisome	63.6	68.24
CDX92843	Canola	peroxisome	19.33	67.76
Solyc09g075770.1.1	Tomato	peroxisome	61.2	65.76
PGSC0003DMT400063438	Potato	peroxisome	7.07	57.61
CDY65251	Canola	peroxisome	16.4	52.56
KRH13185	Soybean	cytosol	34.0	40.8
HORVU3Hr1G059140.1	Barley	peroxisome	35.33	40.27
HORVU5Hr1G046950.26	Barley	peroxisome	35.07	38.62
HORVU5Hr1G099350.15	Barley	peroxisome	33.73	37.87
HORVU7Hr1G024350.1	Barley	endoplasmic reticulum, vacuole	34.0	35.71
HORVU1Hr1G016200.16	Barley	peroxisome	33.07	31.79
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	27.87	29.99
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	27.6	29.66
HORVU5Hr1G052100.13	Barley	peroxisome	27.73	28.3
GSMUA_AchrUn_...	Banana	peroxisome	4.27	25.4
HORVU1Hr1G027510.1	Barley	cytosol	1.73	24.07
HORVU5Hr1G120850.1	Barley	plastid	20.27	22.19
HORVU1Hr1G032500.2	Barley	peroxisome	3.73	17.72

Protein Annotations

EnsemblPlants:HORVU4Hr1G025820.9	EnsemblPlantsGene:HORVU4Hr1G025820	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17
PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	UniParc:UPI000B478988
UniProt:A0A287NLI2	MapMan:5.7.3.1	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:152191806..152211070

Molecular Weight (calculated)

82367.1 Da

IEP (calculated)

7.581

GRAVY (calculated)

-0.099

Length

750 amino acids

Sequence
(BLAST)

001: NELCPNSKKF FLCCPFCPNT SVSALLPRGT HSVSPPLCSP TYPAQQRQLR QTHRWTQPSA ASAPSPPTFS PKQPPTAAPP IASAPIPPQG STPTVLGYSA
101: VLPEKLKTGK WNVYRSAHSP ITLIDRFSDH PDIGTLHDNF VNAVETFRDC RYLGTRVHAD GTIGDYKWMT YGEAGTSRTA IGSGLICHGI PKGARVGLYF
201: INRPEWTIVD NACSAYSYVS VPLYDTLGPD AVQFIVNHAS VEAIFCVPQT LSTLLSFITQ MPCVRLIVVV GGIDENMPSS PAAAGMEIIT YSMLHRQGHM
301: SPQPFRPPKP EDVATICYTS GTTGTPKGAV LSHANFIANV AGQDLGVKFY PSDVYISYLP LAHIYERTNQ IWLLHRGVAI GFYQGDNLKL MDDLNTLKPT
401: IFASVPRLYN KIYAAITNAV KESGGLKERL FHAAYNAKRQ AIINGRNPSP VWDKLVFNKI KARLGGRVRV MSSGASPLSP DVMEFLRICF GGDILEGYGM
501: TETSCVITLM DVGDISIGHV GSPNPACEVK LVDVPEMNYT SEDQPYPRGE ICARGPIIFQ GYYKDEVQTR EVIDEDGWLH TGDIGLWLPG GLLKIIDRKK
601: NIFKLAQGEY IAPEKIENVY AKCKFIAQCF VYGDSFNSCL VAVVAVEPEV LKSWAALEGI QYEDLRQLCS DPRARAAVLA DMDSIGKEAQ LRGFEFVKAV
701: TLVAESFTLE NGLLTPTFKV KRPQAKAYFA KEITDMYAQL LDAESARPKL

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.