CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
mitochondrion 2
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65251	Canola	peroxisome	60.28	55.13
PGSC0003DMT400063438	Potato	peroxisome	21.5	50.0
CDY05217	Canola	plastid	86.92	27.07
CDY27725	Canola	plastid	85.98	26.78
CDX74115	Canola	plastid	80.84	24.86
CDY49993	Canola	mitochondrion	80.84	24.86
VIT_05s0020g03080.t01	Wine grape	peroxisome	74.3	22.81
KRG91264	Soybean	peroxisome	73.36	22.49
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	72.9	22.41
EES15543	Sorghum	peroxisome	70.56	22.14
CDX80638	Canola	peroxisome	71.03	21.75
CDX86151	Canola	peroxisome	70.56	21.6
TraesCS5B01G131800.3	Wheat	peroxisome	70.56	21.51
TraesCS5A01G133200.2	Wheat	peroxisome	70.56	21.51
Zm00001d023238_P002	Maize	plasma membrane	69.16	21.42
TraesCS5D01G141300.1	Wheat	peroxisome	70.09	21.37
Os12t0143900-01	Rice	peroxisome	70.56	21.36
CDY68722	Canola	peroxisome	28.04	21.13
TraesCS4A01G184900.2	Wheat	peroxisome	68.69	21.12
TraesCS4B01G133700.3	Wheat	peroxisome	68.22	20.98
TraesCS4D01G128700.3	Wheat	mitochondrion	68.22	20.98
KXG27718	Sorghum	peroxisome	68.22	20.95
Os11t0147000-01	Rice	peroxisome	69.16	20.87
HORVU5Hr1G040740.17	Barley	peroxisome	69.63	20.84
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	67.29	20.69
CDX80092	Canola	mitochondrion, peroxisome	28.04	20.48
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	67.76	19.33
CDY69216	Canola	peroxisome	35.98	18.69
CDX80093	Canola	peroxisome	35.98	17.87
CDY37793	Canola	peroxisome	35.98	17.87
CDY25270	Canola	peroxisome	38.78	12.59
CDY47618	Canola	peroxisome	39.25	12.59
KRH13185	Soybean	cytosol	36.45	12.48
CDY03515	Canola	peroxisome	38.78	12.44
CDX94232	Canola	peroxisome	38.32	12.41
CDX86825	Canola	peroxisome	38.32	12.31
CDY51419	Canola	peroxisome	36.45	11.82
CDY27501	Canola	peroxisome	36.45	11.82
CDY59237	Canola	peroxisome	35.98	11.56
CDY29350	Canola	peroxisome	35.98	11.56
CDY66248	Canola	peroxisome	38.32	11.37
CDY40856	Canola	peroxisome	38.78	11.32
CDY46530	Canola	peroxisome	41.59	11.32
CDY15082	Canola	peroxisome	37.85	11.31
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	36.45	11.26
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	36.45	11.26
CDX95713	Canola	peroxisome	35.51	11.09
CDY64879	Canola	peroxisome	41.59	9.27
CDY12731	Canola	plastid	29.44	8.69
CDY67321	Canola	plastid	28.97	8.64
CDY01190	Canola	plastid	28.04	8.34
CDY53212	Canola	plastid	28.97	8.29
CDY71490	Canola	extracellular, peroxisome	0.47	0.65
CDY72011	Canola	peroxisome	0.47	0.47

Protein Annotations

EnsemblPlants:CDX92843	EnsemblPlantsGene:GSBRNA2T00154678001	Gene3D:3.40.50.12780	GO:A0A078DZU6	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17	PFAM:PF00501
ProteinID:CDX92843	ProteinID:CDX92843.1	SUPFAM:SSF56801	UniParc:UPI0004EDC023	MapMan:35.1	:

Description

BnaC07g41010D

Coordinates

chrLK031873:-:1089822..1091099

Molecular Weight (calculated)

24026.2 Da

IEP (calculated)

9.368

GRAVY (calculated)

-0.229

Length

214 amino acids

Sequence
(BLAST)

001: MYSKKLKSED LAALRPTVFS SVPRLYNRIY DVITNAVKSS GGLKERLFNA AYNSKKQALL NGKNASAICD RLVFNRIKDK LGGRVRFMTS GASPLSPEVM
101: KFMKICFGAR VLEGYGMTET ACVISGMDES DNLIGHFCSP NPACEIKLPH PRGKICVRGP IVFRGYYKDE VQTYEHLRSG YEDGWLHTGD IGLWLPGGRL
201: QIIDRCFNCY PLFH

Best Arabidopsis Sequence Match ( AT1G64400.1 )
(BLAST)

001: MATGRYIVEV EKGKQGVDGG SPSVGPVYRS IYAKDGFPEP PDDLVSAWDI FRLSVEKSPN NPMLGRREIV DGKAGKYVWQ TYKEVHNVVI KLGNSIRTIG
101: VGKGDKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA GAIEFIICHA EVSLAFAEEN KISELLKTAP KSTKYLKYIV SFGEVTNNQR VEAERHRLTI
201: YSWDQFLKLG EGKHYELPEK RRSDVCTIMY TSGTTGDPKG VLLTNESIIH LLEGVKKLLK TIDEELTSKD VYLSYLPLAH IFDRVIEELC IYEAASIGFW
301: RGDVKILIED IAALKPTVFC AVPRVLERIY TGLQQKLSDG GFVKKKLFNF AFKYKHKNME KGQPHEQASP IADKIVFKKV KEGLGGNVRL ILSGAAPLAA
401: HIESFLRVVA CAHVLQGYGL TESCGGTFVS IPNELSMLGT VGPPVPNVDI RLESVPEMGY DALASNPRGE ICIRGKTLFS GYYKREDLTQ EVFIDGWLHT
501: GDVGEWQPDG AMKIIDRKKN IFKLSQGEYV AVENLENIYS HVAAIESIWV YGNSYESYLV AVVCPSKIQI EHWAKEHKVS GDFESICRNQ KTKEFVLGEF
601: NRVAKDKKLK GFELIKGVHL DTVPFDMERD LITPSYKMKR PQLLKYYQKE IDEMYKKNRE VQLRV

Arabidopsis Description

LACS3Long chain acyl-CoA synthetase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7W4]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.