CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15431

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	EES15431	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	94.83	94.97
TraesCS5B01G131800.3	Wheat	peroxisome	86.23	85.61
EES15543	Sorghum	peroxisome	83.5	85.34
TraesCS5A01G133200.2	Wheat	peroxisome	85.94	85.33
TraesCS5D01G141300.1	Wheat	peroxisome	85.8	85.19
Os12t0143900-01	Rice	peroxisome	85.08	83.88
Os11t0147000-01	Rice	peroxisome	83.36	81.95
HORVU5Hr1G040740.17	Barley	peroxisome	82.93	80.84
VIT_05s0020g03080.t01	Wine grape	peroxisome	73.89	73.89
GSMUA_Achr8P24080_001	Banana	mitochondrion	71.02	72.79
Solyc01g099100.2.1	Tomato	plastid	72.17	72.27
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	70.73	70.83
KRG91264	Soybean	peroxisome	70.73	70.63
VIT_14s0128g00720.t01	Wine grape	peroxisome	63.99	70.46
Bra001177.1-P	Field mustard	plastid	70.16	70.26
AT3G05970.1	Thale cress	plastid	70.59	70.19
CDX74115	Canola	plastid	70.01	70.11
CDY49993	Canola	mitochondrion	69.73	69.83
CDY05217	Canola	plastid	68.44	69.43
CDX80638	Canola	peroxisome	69.58	69.38
Bra009951.1-P	Field mustard	peroxisome	69.44	69.34
Bra020793.1-P	Field mustard	plastid	62.55	69.32
CDY27725	Canola	plastid	68.29	69.29
CDX86151	Canola	peroxisome	69.44	69.24
AT5G27600.1	Thale cress	peroxisome, plastid	69.3	69.0
Solyc09g075790.2.1	Tomato	peroxisome	62.12	68.95
CDX92843	Canola	peroxisome	20.95	68.22
Solyc09g075770.1.1	Tomato	peroxisome	63.7	63.61
PGSC0003DMT400063438	Potato	peroxisome	7.89	59.78
CDY65251	Canola	peroxisome	17.65	52.56
KRH13185	Soybean	cytosol	37.88	42.24
EES01192	Sorghum	peroxisome	38.31	40.76
KXG27302	Sorghum	cytosol	3.16	40.74
KXG28707	Sorghum	peroxisome	37.59	39.4
EES01271	Sorghum	peroxisome	37.02	38.97
OQU75859	Sorghum	peroxisome	36.15	38.83
KXG19348	Sorghum	peroxisome	35.72	38.37
KXG21217	Sorghum	peroxisome	35.58	37.01
OQU82479	Sorghum	peroxisome	35.44	34.16
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	30.13	30.13
KXG23059	Sorghum	endoplasmic reticulum	30.13	30.09
KXG27640	Sorghum	peroxisome	30.99	29.75
GSMUA_AchrUn_...	Banana	peroxisome	4.73	26.19
KXG37146	Sorghum	plastid	22.81	21.54

Protein Annotations

EnsemblPlants:KXG27718	EnsemblPlantsGene:SORBI_3005G033100	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17
PFAM:PF00501	PFAM:PF13193	ProteinID:KXG27718	ProteinID:KXG27718.1	ScanProsite:PS00455	SEG:seg
SUPFAM:SSF56801	UniParc:UPI00081ADB6C	UniProt:A0A1B6PPY6	MapMan:5.7.3.1	:	:

Description

hypothetical protein

Coordinates

chr5:-:2947606..2959266

Molecular Weight (calculated)

77199.7 Da

IEP (calculated)

6.608

GRAVY (calculated)

-0.140

Length

697 amino acids

Sequence
(BLAST)

001: MARQEQEQDT MGAAHVRHQP PPPPPAGGCG LAANPVAAEY AHEQGYSVVL PEKLQTGKWN VYRSAHSPLR LINKFPDNPE IGTLHDNFVY AVETFRDCRY
101: LGTRISPDGT VGDYKWMTYG EASTSRTAIG SGLIFHGIPE GARIGLYFIN RPEWIILDHA CAAYSYVSVP LYDTLGPDAV QFIVNHATVE VIFCVPQTLS
201: AILSFITQMP CVRLIVVVGG DDSNMPTVPA TAECKIMTYN RLHNEGRMSP QTFRPPKPED IATICYTSGT TGTPKGAVLS HENLIANVAG SSLGVKFYPS
301: DVYISYLPLA HIYERANQVA LLHYGVSIGF YQGDNLKLMD DLAALRPTIF ASVPRLYNRI YAAITNAVKE SGGLRERLYH TAYNAKRHAM INGTNPSPMW
401: DKLVFNKIKA RLGGRMRLMT SGASPLSPDV MEFLRICFGE VLEGYGMTET SCVISTMNIG DRSIGHVGSP NPSCEVKLVD VPEMNYTSED QPYPRGEICV
501: RGPIIFCGYY KDEVQTREVI DEDGWLHTGD IGLWLPGGRL KIIDRKKNIF KLAQGEYIAP EKIENVYAKC KFIAQCFIYG DSFNSFLVAI VAVEPEVLKA
601: WAASEGIEYE DLRQLCADPR ARAAVLTDMD SIGKEAQLRG FEFAKAVALV AEPFTLDNGL LTPTFKVKRQ QAKAYFAKEI SDMYAQLRET EVARSKL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.