Factsheet for Bra001177.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74115	Canola	plastid	99.43	99.43
CDY49993	Canola	mitochondrion	98.85	98.85
AT3G05970.1	Thale cress	plastid	94.25	93.58
Bra020793.1-P	Field mustard	plastid	83.62	92.53
VIT_05s0020g03080.t01	Wine grape	peroxisome	78.59	78.48
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	75.86	75.86
KRG91264	Soybean	peroxisome	76.01	75.79
Bra009951.1-P	Field mustard	peroxisome	73.56	73.35
TraesCS4B01G133700.3	Wheat	peroxisome	72.84	72.84
EES15543	Sorghum	peroxisome	71.26	72.73
TraesCS4A01G184900.2	Wheat	peroxisome	72.7	72.7
TraesCS4D01G128700.3	Wheat	mitochondrion	72.7	72.7
Zm00001d023238_P002	Maize	plasma membrane	71.84	72.36
TraesCS5B01G131800.3	Wheat	peroxisome	72.84	72.22
TraesCS5A01G133200.2	Wheat	peroxisome	72.56	71.94
Os12t0143900-01	Rice	peroxisome	72.99	71.85
TraesCS5D01G141300.1	Wheat	peroxisome	72.41	71.79
Os11t0147000-01	Rice	peroxisome	72.27	70.94
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	70.4	70.4
KXG27718	Sorghum	peroxisome	70.26	70.16
HORVU5Hr1G040740.17	Barley	peroxisome	70.98	69.09
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	70.98	65.87
PGSC0003DMT400063438	Potato	peroxisome	7.76	58.7
KRH13185	Soybean	cytosol	38.22	42.56
Bra013735.1-P	Field mustard	peroxisome	34.48	38.52
Bra033159.1-P	Field mustard	peroxisome	33.19	38.24
Bra032284.1-P	Field mustard	peroxisome	36.49	38.14
Bra021392.1-P	Field mustard	peroxisome	35.49	37.42
Bra035259.1-P	Field mustard	peroxisome	35.63	37.24
Bra004467.1-P	Field mustard	peroxisome	35.63	35.58
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	31.75	31.89
Bra013210.1-P	Field mustard	peroxisome	31.75	30.65
Bra027700.1-P	Field mustard	peroxisome	36.35	30.63
Bra001919.1-P	Field mustard	plastid	24.14	23.4
Bra032757.1-P	Field mustard	plastid	23.71	22.95

Protein Annotations

Gene3D:3.40.50.12780	MapMan:5.7.3.1	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:Bra001177	EnsemblPlants:Bra001177.1
EnsemblPlants:Bra001177.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010193	GO:GO:0016020	UniProt:M4CAE8	PFAM:PF00501
ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17	SUPFAM:SSF56801	UniParc:UPI0002540AA2	SEG:seg

Description

AT3G05970 (E=0.0) LACS6, ATLACS6 | LACS6 (long-chain acyl-CoA synthetase 6); long-chain-fatty-acid-CoA ligase

Coordinates

chrA03:-:15138432..15143524

Molecular Weight (calculated)

76168.1 Da

IEP (calculated)

7.727

GRAVY (calculated)

-0.087

Length

696 amino acids

Sequence
(BLAST)

001: MDSTTAARRR INAIHSHLVT SSRSSPLLLS SNPTAGEFCL DNGYSVVLPE KLSTGKWNVY RSARSPFKLV SRFPDHPDIA TLHDNFEHAV HDFRDYKYLG
101: TRVRVDGTVG DYKWMTYGEV GTARTALGSG LVHHGITTGS SVGIFFINRP EWLIVDQACA SYSYVSVPLY DTLGPDAVKF IVNHANVQAI FCVAETLNSL
201: LSGLSEMPSV RLVVVVGGLN ESLPSLPPSA GVKVVSYSVL LNQGRSNPQP FSPPKPDDVA TLCYTSGTTG TPKGVVLTHA NLIANVAGSS FSVKFFSSDI
301: YISYLPLAHI YERANQILAV YFGVAVGFYQ GDNMKLLDDL AALRPTVFSS VPRLYNRIYD GITNAVKTSG GLKERLFHAA YNAKKQALLN GKSASPIWDR
401: LVFNKIKDRL GGRVRFMTSG ASPLSPEVLE FLKICFGGRV SEGYGMTETS CVISGMDEGD NLTGHVGSPN PACEVKLVDV PEMNYTSADE PHPRGEICVR
501: GPIIFRGYYK DEVQTREVID EDGWLHTGDI GLWLPGGRLK IIDRKKNIFK LAQGEYIAPE KIENVYAKCR FVGQCFIYGD SFNSSLVAVV SVDPDVLKSW
601: AASEGIKGDL RELCNNPRVK AAVLSDMDAV GRESQLRGFE FAKAVTLVLE PFTLENGLLT PTFKIKRPQA KEYFAEAITN MYKELAASDP TANKAL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.