Factsheet for Bra032284.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29350	Canola	peroxisome	100.0	100.0
AT1G49430.1	Thale cress	peroxisome	91.14	91.28
KRH48841	Soybean	peroxisome	24.32	73.97
VIT_03s0063g01880.t01	Wine grape	peroxisome	67.72	68.44
KRH24533	Soybean	peroxisome	67.12	68.14
PGSC0003DMT400064817	Potato	peroxisome	67.42	68.13
KRH29538	Soybean	peroxisome	66.97	67.99
Solyc01g109180.2.1	Tomato	nucleus	67.12	67.83
KRG89197	Soybean	peroxisome	67.12	67.73
KRH49531	Soybean	peroxisome	66.97	67.58
GSMUA_Achr7P27390_001	Banana	peroxisome	64.11	65.09
Os11t0558300-01	Rice	peroxisome	61.71	62.18
KXG28707	Sorghum	peroxisome	61.11	61.2
TraesCS5D01G420300.1	Wheat	golgi	60.81	61.18
TraesCS5A01G411500.2	Wheat	golgi	60.96	61.14
HORVU5Hr1G099350.15	Barley	peroxisome	61.11	60.93
TraesCS5B01G415100.1	Wheat	peroxisome	60.51	60.88
Zm00001d053127_P005	Maize	mitochondrion	60.66	60.84
Bra013735.1-P	Field mustard	peroxisome	49.85	53.29
Bra033159.1-P	Field mustard	peroxisome	47.9	52.81
Bra035259.1-P	Field mustard	peroxisome	52.7	52.7
Bra021392.1-P	Field mustard	peroxisome	44.14	44.55
Bra027700.1-P	Field mustard	peroxisome	52.85	42.62
Bra004467.1-P	Field mustard	peroxisome	44.44	42.47
Bra001177.1-P	Field mustard	plastid	38.14	36.49
Bra020793.1-P	Field mustard	plastid	34.23	36.25
Bra009951.1-P	Field mustard	peroxisome	37.09	35.39
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	31.08	29.87
Bra013210.1-P	Field mustard	peroxisome	31.08	28.71
Bra001919.1-P	Field mustard	plastid	24.62	22.84
Bra032757.1-P	Field mustard	plastid	24.02	22.25

Protein Annotations

Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:Bra032284	EnsemblPlants:Bra032284.1
EnsemblPlants:Bra032284.1-P	GO:GO:0001676	GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009605
GO:GO:0009607	GO:GO:0009653	GO:GO:0009791	GO:GO:0009987	GO:GO:0010143	GO:GO:0010311
GO:GO:0031957	GO:GO:0050832	UniProt:M4EU02	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272
PANTHER:PTHR43272:SF4	SUPFAM:SSF56801	UniParc:UPI0002547BC8	:	:	:

Description

AT1G49430 (E=0.0) LRD2, LACS2 | LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2); long-chain-fatty-acid-CoA ligase

Coordinates

chrA05:-:11962806..11967387

Molecular Weight (calculated)

74377.4 Da

IEP (calculated)

6.332

GRAVY (calculated)

-0.158

Length

666 amino acids

Sequence
(BLAST)

001: MAAAADHVVI MEEGRQATAE HPSAGPVYRC KYAKDGLLDL PADLDSPWQL FSEAVKQYPN EQMLGRRVTV DSKVGPYTWI TYREAHDAAL RIGSAIRSRG
101: VNPGNCCGIY GSNCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK ALSSILACRK GCSSNLKTIV SFGEVSITQK EEAENQCVSL
201: FSWHEFLLMG NSDETTLPRK QKTDICTIMY TSGTTGEPKG VILSNAAIMV EVLSIDKMLQ VTDRSCDTSD LFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VHALKPTVFC GVPRVYDKLY AGVMQKISAG GLIRKKLFDL AYNYKLGNMR KGLSQEEASP RLDRLMFDKI KDALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY EAFSGDVARG EICLRGNSMF SGYHKRQDLT DQVVINGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW IYGNSFESFL VAVVVPERKA IEDWAKLNNQ SSPNDFESLC QNLKAQKYFL
601: DELNSTAKQY QLKGFEMLKA VHLEPNLFDI ERDLITPTFK LKRPQLLKHY KSIIDQLYTE AKASRA

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.