Factsheet for TraesCS5D01G420300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G411500.2	Wheat	golgi	98.19	97.89
TraesCS5B01G415100.1	Wheat	peroxisome	97.13	97.13
HORVU5Hr1G099350.15	Barley	peroxisome	97.43	96.56
Os11t0558300-01	Rice	peroxisome	85.65	85.78
KXG28707	Sorghum	peroxisome	84.74	84.36
Zm00001d053127_P005	Maize	mitochondrion	83.08	82.83
KRH48841	Soybean	peroxisome	23.57	71.23
GSMUA_Achr7P27390_001	Banana	peroxisome	68.88	69.51
PGSC0003DMT400064817	Potato	peroxisome	68.88	69.2
Solyc01g109180.2.1	Tomato	nucleus	68.58	68.89
VIT_03s0063g01880.t01	Wine grape	peroxisome	65.11	65.4
KRH49531	Soybean	peroxisome	65.11	65.3
KRG89197	Soybean	peroxisome	64.95	65.15
KRH24533	Soybean	peroxisome	64.2	64.79
KRH29538	Soybean	peroxisome	64.2	64.79
AT1G49430.1	Thale cress	peroxisome	62.08	61.8
CDY29350	Canola	peroxisome	61.18	60.81
Bra032284.1-P	Field mustard	peroxisome	61.18	60.81
CDY59237	Canola	peroxisome	61.18	60.81
TraesCS5D01G144200.2	Wheat	peroxisome	58.91	58.47
TraesCS3D01G237900.1	Wheat	peroxisome	57.1	57.45
TraesCS7D01G110700.1	Wheat	peroxisome	53.47	54.46
TraesCS1D01G077600.1	Wheat	golgi	46.98	46.42
TraesCS4D01G128700.3	Wheat	mitochondrion	38.82	36.93
TraesCS5D01G141300.1	Wheat	peroxisome	38.67	36.47
AT2G47245.1	Thale cress	endoplasmic reticulum	6.34	32.31
TraesCS5D01G174000.1	Wheat	peroxisome	32.63	29.67
TraesCS5D01G129800.1	Wheat	golgi	31.27	29.66
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	30.82	29.27
TraesCS5D01G533800.3	Wheat	mitochondrion, plastid	23.41	20.97
TraesCS5D01G533700.1	Wheat	plastid	23.11	20.87

Protein Annotations

EnsemblPlants:TraesCS5D01G420300.1	EnsemblPlantsGene:TraesCS5D01G420300	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF4
PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	TIGR:cd05927
MapMan:50.6.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:480855115..480859645

Molecular Weight (calculated)

73746.9 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.163

Length

662 amino acids

Sequence
(BLAST)

001: MDKTAYTVKV GEATPAAGGR PAAGPVYRSI YAKDGLMRLP QEIHSPWDFF SGAVKKYPKN RMLGRRQVSD GKAGDYVWQT YEQVYQKVIQ IGAAIRGFGV
101: KPGAHCAIYG SNCPEWVMAM QACNSQGICY VPLYDTLGQN AVEFILDHAE ISIAFMQESK IKSIASILPK CTAHIKAIVS FGDVPIELKR EVEQLGVSCF
201: SWEEFSTMGE DIQELPKKQK DDICTIMYTS GTTGEPKGVI ITNRAIVAGV TTTEHLLQLT DKVVDEYDSY FSYLPLAHIF DQVIGNYCIS KGASIGFWQG
301: DIRYLMEDVQ VMKPTIFCGV PRVYDRIYTG INQKIQSGGL IAKHLFQYAY NYKLGNLMNG FKQHEASPFF DKIVFSKIKE GLGGRIRLML SGAAPLPRHI
401: EEFMRVTSCS VLAQGYGLTE SCSGCFTSIA NVISMIGTVG PPVTAVEARL ESVPEMGYDA LSSAPRGEIC LRGHTLFSGY YKRPDLTKEV FSDGWFHTGD
501: IGEWQPDGTM KIIDRKKNIF KLSQGEYVAV EVLESAYAQS QLVASVWVYG NSFESFLVAV VVPEKQAIED WAALNSKSGD YAELCSDPKA RRYIQDELNQ
601: TGKKLGLRGF EMLRAVHLEP VPFSIDKDLI TPTFKLKRPQ LLKYYKNRVD QLYKDAKMGT AQ

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.