Factsheet for TraesCS1D01G077600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G093600.1	Wheat	peroxisome	98.96	98.96
TraesCS1A01G075000.1	Wheat	golgi	98.96	98.96
KXG21217	Sorghum	peroxisome	85.22	85.22
Os05t0132100-02	Rice	plasma membrane	85.07	85.2
Zm00001d024723_P001	Maize	peroxisome	85.07	85.07
HORVU1Hr1G016200.16	Barley	peroxisome	98.51	84.62
GSMUA_Achr8P10780_001	Banana	peroxisome	70.3	70.93
Zm00001d010943_P001	Maize	peroxisome	14.63	69.5
VIT_07s0005g01790.t01	Wine grape	peroxisome	66.12	66.92
KRH68292	Soybean	endoplasmic reticulum	64.33	65.11
KRG96554	Soybean	peroxisome	64.33	65.11
PGSC0003DMT400023374	Potato	peroxisome	63.88	64.75
KRH69184	Soybean	peroxisome	62.54	63.48
KRH31765	Soybean	peroxisome	62.24	63.18
AT2G47240.2	Thale cress	peroxisome	61.04	61.97
CDY69216	Canola	peroxisome	38.06	61.89
Bra021392.1-P	Field mustard	peroxisome	60.9	61.82
CDY51419	Canola	peroxisome	60.9	61.82
CDY27501	Canola	peroxisome	60.15	61.06
CDY37793	Canola	peroxisome	38.51	59.86
CDX80093	Canola	peroxisome	38.51	59.86
CDY71490	Canola	extracellular, peroxisome	13.43	58.44
CDY72011	Canola	peroxisome	18.36	58.29
Bra004467.1-P	Field mustard	peroxisome	60.45	58.11
CDY68722	Canola	peroxisome	24.63	58.1
CDX80092	Canola	mitochondrion, peroxisome	25.22	57.68
KRH66241	Soybean	peroxisome	29.25	55.68
CDX95713	Canola	peroxisome	54.93	53.72
TraesCS7D01G110700.1	Wheat	peroxisome	46.87	48.31
TraesCS5D01G144200.2	Wheat	peroxisome	47.31	47.53
TraesCS3D01G237900.1	Wheat	peroxisome	46.42	47.26
TraesCS5D01G420300.1	Wheat	golgi	46.42	46.98
TraesCS4D01G128700.3	Wheat	mitochondrion	37.16	35.78
TraesCS5D01G141300.1	Wheat	peroxisome	36.42	34.76
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	33.58	32.28
TraesCS5D01G129800.1	Wheat	golgi	31.79	30.52
TraesCS5D01G174000.1	Wheat	peroxisome	30.0	27.61
TraesCS5D01G533700.1	Wheat	plastid	24.93	22.78
TraesCS5D01G533800.3	Wheat	mitochondrion, plastid	24.63	22.33

Protein Annotations

Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824
GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010025
GO:GO:0010143	GO:GO:0031957	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF6
SUPFAM:SSF56801	EnsemblPlantsGene:TraesCS1D01G077600	EnsemblPlants:TraesCS1D01G077600.1	TIGR:cd05927	SEG:seg	:

Description

No Description!

Coordinates

chr1D:-:59522811..59529018

Molecular Weight (calculated)

75032.7 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.253

Length

670 amino acids

Sequence
(BLAST)

001: MEGAKKQVFT IQVEDGKPGK DGRPAVGPVF RNILAKDGFP PLDPDMRTSW DVFRTAAGKY PDNRMLGWRP FKDGVPGPYL WKSYKEVYEE VLQIGSALQQ
101: LGVQPGSRVG IYGSNCPQWV VAMQACNGYS IICVPLYDTL GAGAVDYIID HAEIDVVFIQ DKKIKEILSP NCTSATRLKA LVAFTSANNE QIKDAEQIGM
201: KVYSWNDFLK MGKDKPVQPR PPQPNDTCTI MYTSGTSGQP KGVMLSHESH GMYVKGVDLF MDQFEDKMST EDVFLSFLPL AHILDRMIEE YFFHKGASVG
301: YYHGDLNALR DDLMELKPTL LVGVPRVYEK IYEGILKALA DLRPLRRVIF NALYNRKLAS MKAGYTQKTA SPFADMLAFR KVKARLGGRL RLLISGGAPL
401: STEIEEFMRV TSCAYFIQGY GLTETLGPST VGYPDDMSLV GTAGVAATFT ELRLEEVPEM GYDPLGVPSR GEILIRGSTV FTGYYKNPEL TNEVMVDGWF
501: HTGDIGEMTP DGILKVIDRK KNIFKLSQGE YVAVEYLEKV YVFPPIIEDI WVYGDSYKSM LVAVVNPHEE NTMKWAGSNG YKGSFSEICK SEGLKEHVLK
601: ELAAAAQKNK LRGFEYIQGV VLDPVPFDIE RDLVTATMKK RRNYMLKYYQ PEIDKVYKAL EGQRAANKAK

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.