Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68722 | Canola | peroxisome | 52.48 | 26.06 |
| CDX80092 | Canola | mitochondrion, peroxisome | 53.19 | 25.6 |
| CDY69216 | Canola | peroxisome | 50.35 | 17.23 |
| KXG21217 | Sorghum | peroxisome | 78.72 | 16.57 |
| CDX80093 | Canola | peroxisome | 50.35 | 16.47 |
| CDY37793 | Canola | peroxisome | 50.35 | 16.47 |
| Zm00001d024723_P001 | Maize | peroxisome | 77.31 | 16.27 |
| KRH66241 | Soybean | peroxisome | 38.3 | 15.34 |
| TraesCS1D01G077600.1 | Wheat | golgi | 69.5 | 14.63 |
| TraesCS1B01G093600.1 | Wheat | peroxisome | 68.79 | 14.48 |
| TraesCS1A01G075000.1 | Wheat | golgi | 68.79 | 14.48 |
| Os05t0132100-02 | Rice | plasma membrane | 65.25 | 13.75 |
| HORVU1Hr1G016200.16 | Barley | peroxisome | 70.21 | 12.69 |
| PGSC0003DMT400023374 | Potato | peroxisome | 57.45 | 12.25 |
| GSMUA_Achr8P10780_001 | Banana | peroxisome | 57.45 | 12.2 |
| KRH68292 | Soybean | endoplasmic reticulum | 55.32 | 11.78 |
| VIT_07s0005g01790.t01 | Wine grape | peroxisome | 55.32 | 11.78 |
| KRH69184 | Soybean | peroxisome | 54.61 | 11.67 |
| KRH31765 | Soybean | peroxisome | 53.9 | 11.52 |
| AT2G47240.2 | Thale cress | peroxisome | 53.9 | 11.52 |
| KRG96554 | Soybean | peroxisome | 53.9 | 11.48 |
| CDY51419 | Canola | peroxisome | 51.77 | 11.06 |
| CDY27501 | Canola | peroxisome | 51.77 | 11.06 |
| Bra021392.1-P | Field mustard | peroxisome | 51.77 | 11.06 |
| Zm00001d043851_P001 | Maize | mitochondrion | 49.65 | 10.54 |
| Zm00001d044016_P001 | Maize | mitochondrion | 48.94 | 10.53 |
| Zm00001d045295_P001 | Maize | extracellular | 50.35 | 10.52 |
| CDX95713 | Canola | peroxisome | 50.35 | 10.37 |
| Bra004467.1-P | Field mustard | peroxisome | 51.06 | 10.33 |
| Zm00001d053127_P005 | Maize | mitochondrion | 40.43 | 8.58 |
| Zm00001d052485_P001 | Maize | mitochondrion, peroxisome | 36.17 | 7.33 |
| Zm00001d023238_P002 | Maize | plasma membrane | 34.75 | 7.09 |
| Zm00001d005019_P004 | Maize | plasma membrane | 30.5 | 5.92 |
| Zm00001d052399_P007 | Maize | peroxisome | 30.5 | 5.92 |
| Zm00001d023538_P002 | Maize | plastid | 28.37 | 5.73 |
| Zm00001d053009_P009 | Maize | plastid | 27.66 | 5.59 |
| Zm00001d034832_P006 | Maize | plastid | 24.82 | 4.39 |
| CDY72011 | Canola | peroxisome | 0.0 | 0.0 |
| CDY71490 | Canola | extracellular, peroxisome | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d010943_P001 | EnsemblPlants:Zm00001d010943_T001 | EnsemblPlantsGene:Zm00001d010943 | Gene3D:3.40.50.12780 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | InterPro:AMP-dep_Synth/Lig | PANTHER:PTHR43272 | PANTHER:PTHR43272:SF6 | PFAM:PF00501 |
| ProteinID:AQK95294.1 | SUPFAM:SSF56801 | UniParc:UPI0002212D2E | UniProt:A0A1D6FV16 | MapMan:35.1 | : |
Description
Long chain acyl-CoA synthetase 1
Coordinates
chr8:-:134412981..134414678
Molecular Weight (calculated)
15850.0 Da
IEP (calculated)
8.757
GRAVY (calculated)
-0.582
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYDPLGVPS HGEICIRGKY LFSGYYKSPE LTNEAIVDGW FHTGDIGEMT PDGILKIWVY GDSFKSSLVA VVNPHEENTM KWAESNGYKG GLKEYIPKEL
101: TTIAHKNKSE IDTVYKKLEA QKNGAKSHKL KKGKHCCKFH I
101: TTIAHKNKSE IDTVYKKLEA QKNGAKSHKL KKGKHCCKFH I
001: MLGWRRIVDE KVGPYMWKTY KEVYEEVLQI GSALRAAGAE PGSRVGIYGV NCPQWIIAME ACAAHTLICV PLYDTLGSGA VDYIVEHAEI DFVFVQDTKI
101: KGLLEPDCKC AKRLKAIVSF TNVSDELSHK ASEIGVKTYS WIDFLHMGRE KPEDTNPPKA FNICTIMYTS GTSGDPKGVV LTHQAVATFV VGMDLYMDQF
201: EDKMTHDDVY LSFLPLAHIL DRMNEEYFFR KGASVGYYHG NLNVLRDDIQ ELKPTYLAGV PRVFERIHEG IQKALQELNP RRRFIFNALY KHKLAWLNRG
301: YSHSKASPMA DFIAFRKIRD KLGGRIRLLV SGGAPLSPEI EEFLRVTCCC FVVQGYGLTE TLGGTALGFP DEMCMLGTVG IPAVYNEIRL EEVSEMGYDP
401: LGENPAGEIC IRGQCMFSGY YKNPELTEEV MKDGWFHTGD IGEILPNGVL KIIDRKKNLI KLSQGEYVAL EHLENIFGQN SVVQDIWVYG DSFKSMLVAV
501: VVPNPETVNR WAKDLGFTKP FEELCSFPEL KEHIISELKS TAEKNKLRKF EYIKAVTVET KPFDVERDLV TATLKNRRNN LLKYYQVQID EMYRKLASKK
601: I
101: KGLLEPDCKC AKRLKAIVSF TNVSDELSHK ASEIGVKTYS WIDFLHMGRE KPEDTNPPKA FNICTIMYTS GTSGDPKGVV LTHQAVATFV VGMDLYMDQF
201: EDKMTHDDVY LSFLPLAHIL DRMNEEYFFR KGASVGYYHG NLNVLRDDIQ ELKPTYLAGV PRVFERIHEG IQKALQELNP RRRFIFNALY KHKLAWLNRG
301: YSHSKASPMA DFIAFRKIRD KLGGRIRLLV SGGAPLSPEI EEFLRVTCCC FVVQGYGLTE TLGGTALGFP DEMCMLGTVG IPAVYNEIRL EEVSEMGYDP
401: LGENPAGEIC IRGQCMFSGY YKNPELTEEV MKDGWFHTGD IGEILPNGVL KIIDRKKNLI KLSQGEYVAL EHLENIFGQN SVVQDIWVYG DSFKSMLVAV
501: VVPNPETVNR WAKDLGFTKP FEELCSFPEL KEHIISELKS TAEKNKLRKF EYIKAVTVET KPFDVERDLV TATLKNRRNN LLKYYQVQID EMYRKLASKK
601: I
Arabidopsis Description
LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.