Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- peroxisome 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d031327_P009 | |
| Zm00001d052851_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27600.1 | Zm00001d031327_P009 | AT5G56290.1 | 16256065 |
| AT5G27600.1 | Zm00001d052851_P002 | AT5G56290.1 | 16256065 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15543 | Sorghum | peroxisome | 93.63 | 94.87 |
| Zm00001d052485_P001 | Maize | mitochondrion, peroxisome | 84.52 | 83.91 |
| TraesCS5B01G131800.3 | Wheat | peroxisome | 85.09 | 83.76 |
| TraesCS5D01G141300.1 | Wheat | peroxisome | 84.8 | 83.48 |
| TraesCS5A01G133200.2 | Wheat | peroxisome | 84.8 | 83.48 |
| Os12t0143900-01 | Rice | peroxisome | 84.52 | 82.6 |
| Os11t0147000-01 | Rice | peroxisome | 84.23 | 82.09 |
| HORVU5Hr1G040740.17 | Barley | peroxisome | 82.63 | 79.86 |
| VIT_05s0020g03080.t01 | Wine grape | peroxisome | 75.69 | 75.04 |
| GSMUA_Achr8P24080_001 | Banana | mitochondrion | 73.37 | 74.56 |
| Solyc01g099100.2.1 | Tomato | plastid | 74.24 | 73.71 |
| Bra001177.1-P | Field mustard | plastid | 72.36 | 71.84 |
| KRH35544 | Soybean | endoplasmic reticulum, mitochondrion | 72.36 | 71.84 |
| AT3G05970.1 | Thale cress | plastid | 72.79 | 71.75 |
| CDY49993 | Canola | mitochondrion | 72.21 | 71.7 |
| CDX74115 | Canola | plastid | 72.21 | 71.7 |
| KRG91264 | Soybean | peroxisome | 72.36 | 71.63 |
| CDY05217 | Canola | plastid | 70.91 | 71.32 |
| VIT_14s0128g00720.t01 | Wine grape | peroxisome | 65.27 | 71.25 |
| Bra020793.1-P | Field mustard | plastid | 64.83 | 71.22 |
| CDY27725 | Canola | plastid | 70.77 | 71.18 |
| AT5G27600.1 | Thale cress | peroxisome, plastid | 71.78 | 70.86 |
| Bra009951.1-P | Field mustard | peroxisome | 71.49 | 70.77 |
| CDX86151 | Canola | peroxisome | 71.49 | 70.67 |
| CDX80638 | Canola | peroxisome | 71.35 | 70.53 |
| Solyc09g075790.2.1 | Tomato | peroxisome | 63.82 | 70.22 |
| CDX92843 | Canola | peroxisome | 21.42 | 69.16 |
| Solyc09g075770.1.1 | Tomato | peroxisome | 66.57 | 65.9 |
| PGSC0003DMT400063438 | Potato | peroxisome | 7.96 | 59.78 |
| CDY65251 | Canola | peroxisome | 17.95 | 52.99 |
| KRH13185 | Soybean | cytosol | 37.77 | 41.76 |
| Zm00001d044016_P001 | Maize | mitochondrion | 38.78 | 40.92 |
| Zm00001d043851_P001 | Maize | mitochondrion | 38.06 | 39.61 |
| Zm00001d053127_P005 | Maize | mitochondrion | 37.48 | 39.01 |
| Zm00001d045295_P001 | Maize | extracellular | 36.76 | 37.63 |
| Zm00001d024723_P001 | Maize | peroxisome | 35.46 | 36.57 |
| Zm00001d010943_P001 | Maize | peroxisome | 7.09 | 34.75 |
| Zm00001d005019_P004 | Maize | plasma membrane | 31.55 | 30.03 |
| Zm00001d023538_P002 | Maize | plastid | 29.96 | 29.66 |
| Zm00001d052399_P007 | Maize | peroxisome | 31.11 | 29.61 |
| Zm00001d053009_P009 | Maize | plastid | 29.38 | 29.08 |
| GSMUA_AchrUn_... | Banana | peroxisome | 4.78 | 26.19 |
| Zm00001d034832_P006 | Maize | plastid | 23.44 | 20.3 |
Protein Annotations
| EnsemblPlants:Zm00001d023238_P002 | EnsemblPlants:Zm00001d023238_T002 | EnsemblPlantsGene:Zm00001d023238 | Gene3D:3.40.50.12780 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig | PANTHER:PTHR43272 | PANTHER:PTHR43272:SF17 |
| PFAM:PF00501 | ProteinID:AQK38685.1 | ProteinID:AQK38689.1 | ScanProsite:PS00455 | SUPFAM:SSF56801 | UniParc:UPI0001B325F0 |
| UniProt:A0A1D6IQW2 | MapMan:5.7.3.1 | : | : | : | : |
Description
Long chain acyl-CoA synthetase 6 peroxisomal
Coordinates
chr10:+:1102077..1122326
Molecular Weight (calculated)
75881.3 Da
IEP (calculated)
7.583
GRAVY (calculated)
-0.057
Length
691 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAQRRVGT HLQRPPPPAG GYGLTVNPTA AEYVHAQGYS VLLPEKLQTG RWNVYRSARS PLRLISRFPD TPDIGTLHDN FTYAVETFTD CKYLGTRIRA
101: DGTIGDYKWM TYGEASTSRT AVGSGLIYHG VREGACIGLY FVNRPEWIIV DHACSAYSYV SVPLYDTLGP DAVQFIVNHA AVEVIFCVPQ TLSTLLSFIA
201: QMPCVRLIVV VGGDDANLPS TPVTTGVQII TYSRLLIQGK ASPQPFCLPK PEDVATICYT SGTTGTPKGA VLSHGNLIAN VAGSSLNIKF YPSDVYISYL
301: PLAHIYERVN QIAALHCGVA IGFYQGDNLK LMDDLAALRP TIFASVPRLY NRIYTAITNA VKESGGLKEK LFHTAYNAKR QAILKGKNPS PVWDKLVFNK
401: IKARLGGRVR LMSSGASPLS ADVMEFLRIC FGGEVLEGYG MTETSCIISA MDIGDRSIGH VGSPTASCEV KLVDVPEMNY TSDDQPYPRG EICVRGPIIF
501: QGYYKDEVQT KEVIDEDGWL HTGDIGLWLP GGRLKIIDRK KNIFKLAQGE YIAPEKIENV YAKCKFIAQC FIYGDSFNSS LVGIVAVEPE VMKAWAASEG
601: IQCEDLRQLC ADPRARAAVL ADMDSVGKEA QLRGFEFAKA VRLVAEPFTV DNGLLTPTFK VKRQQAKTYF AKEISDMYAE LREAEAPRSK L
101: DGTIGDYKWM TYGEASTSRT AVGSGLIYHG VREGACIGLY FVNRPEWIIV DHACSAYSYV SVPLYDTLGP DAVQFIVNHA AVEVIFCVPQ TLSTLLSFIA
201: QMPCVRLIVV VGGDDANLPS TPVTTGVQII TYSRLLIQGK ASPQPFCLPK PEDVATICYT SGTTGTPKGA VLSHGNLIAN VAGSSLNIKF YPSDVYISYL
301: PLAHIYERVN QIAALHCGVA IGFYQGDNLK LMDDLAALRP TIFASVPRLY NRIYTAITNA VKESGGLKEK LFHTAYNAKR QAILKGKNPS PVWDKLVFNK
401: IKARLGGRVR LMSSGASPLS ADVMEFLRIC FGGEVLEGYG MTETSCIISA MDIGDRSIGH VGSPTASCEV KLVDVPEMNY TSDDQPYPRG EICVRGPIIF
501: QGYYKDEVQT KEVIDEDGWL HTGDIGLWLP GGRLKIIDRK KNIFKLAQGE YIAPEKIENV YAKCKFIAQC FIYGDSFNSS LVGIVAVEPE VMKAWAASEG
601: IQCEDLRQLC ADPRARAAVL ADMDSVGKEA QLRGFEFAKA VRLVAEPFTV DNGLLTPTFK VKRQQAKTYF AKEISDMYAE LREAEAPRSK L
001: MEFASPEQRR LETIRSHIDT SPTNDQSSSL FLNATASSAS PFFKEDSYSV VLPEKLDTGK WNVYRSKRSP TKLVSRFPDH PEIGTLHDNF VHAVETYAEN
101: KYLGTRVRSD GTIGEYSWMT YGEAASERQA IGSGLLFHGV NQGDCVGLYF INRPEWLVVD HACAAYSFVS VPLYDTLGPD AVKFVVNHAN LQAIFCVPQT
201: LNILLSFLAE IPSIRLIVVV GGADEHLPSL PRGTGVTIVS YQKLLSQGRS SLHPFSPPKP EDIATICYTS GTTGTPKGVV LTHGNLIANV AGSSVEAEFF
301: PSDVYISYLP LAHIYERANQ IMGVYGGVAV GFYQGDVFKL MDDFAVLRPT IFCSVPRLYN RIYDGITSAV KSSGVVKKRL FEIAYNSKKQ AIINGRTPSA
401: FWDKLVFNKI KEKLGGRVRF MGSGASPLSP DVMDFLRICF GCSVREGYGM TETSCVISAM DDGDNLSGHV GSPNPACEVK LVDVPEMNYT SDDQPYPRGE
501: ICVRGPIIFK GYYKDEEQTR EILDGDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY TKCRFVSQCF IHGDSFNSSL VAIVSVDPEV
601: MKDWAASEGI KYEHLGQLCN DPRVRKTVLA EMDDLGREAQ LRGFEFAKAV TLVPEPFTLE NGLLTPTFKI KRPQAKAYFA EAISKMYAEI AASNPIPSKL
101: KYLGTRVRSD GTIGEYSWMT YGEAASERQA IGSGLLFHGV NQGDCVGLYF INRPEWLVVD HACAAYSFVS VPLYDTLGPD AVKFVVNHAN LQAIFCVPQT
201: LNILLSFLAE IPSIRLIVVV GGADEHLPSL PRGTGVTIVS YQKLLSQGRS SLHPFSPPKP EDIATICYTS GTTGTPKGVV LTHGNLIANV AGSSVEAEFF
301: PSDVYISYLP LAHIYERANQ IMGVYGGVAV GFYQGDVFKL MDDFAVLRPT IFCSVPRLYN RIYDGITSAV KSSGVVKKRL FEIAYNSKKQ AIINGRTPSA
401: FWDKLVFNKI KEKLGGRVRF MGSGASPLSP DVMDFLRICF GCSVREGYGM TETSCVISAM DDGDNLSGHV GSPNPACEVK LVDVPEMNYT SDDQPYPRGE
501: ICVRGPIIFK GYYKDEEQTR EILDGDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY TKCRFVSQCF IHGDSFNSSL VAIVSVDPEV
601: MKDWAASEGI KYEHLGQLCN DPRVRKTVLA EMDDLGREAQ LRGFEFAKAV TLVPEPFTLE NGLLTPTFKI KRPQAKAYFA EAISKMYAEI AASNPIPSKL
Arabidopsis Description
LACS7Long chain acyl-CoA synthetase 7, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LKS5]
SUBAcon: [peroxisome,plastid]
SUBAcon: [peroxisome,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.