Factsheet for Zm00001d023538_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
peroxisome 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23059	Sorghum	endoplasmic reticulum	96.7	96.7
Os12t0168700-01	Rice	vacuole	89.68	89.68
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	87.39	87.39
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	87.39	87.39
TraesCS5D01G129800.1	Wheat	golgi	87.25	87.25
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	87.11	87.11
Zm00001d053009_P009	Maize	plastid	81.23	81.23
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	77.79	77.91
GSMUA_Achr11P...	Banana	endoplasmic reticulum	77.08	77.19
GSMUA_Achr1P13190_001	Banana	vacuole	70.49	76.64
Solyc11g018580.1.1	Tomato	plastid	64.9	74.26
VIT_18s0001g02810.t01	Wine grape	vacuole	74.07	74.17
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	60.17	74.07
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.78	73.3
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.78	73.3
PGSC0003DMT400002337	Potato	mitochondrion	73.07	73.28
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.64	73.16
AT1G77590.1	Thale cress	peroxisome, plastid	72.21	72.94
KRH18736	Soybean	peroxisome, plastid	71.06	71.26
KRH53234	Soybean	mitochondrion	70.63	71.04
KRH16338	Soybean	plastid, vacuole	61.32	66.15
Zm00001d052399_P007	Maize	peroxisome	62.89	60.47
Zm00001d005019_P004	Maize	plasma membrane	62.46	60.06
Zm00001d043851_P001	Maize	mitochondrion	31.66	33.28
Zm00001d044016_P001	Maize	mitochondrion	31.23	33.28
Zm00001d024723_P001	Maize	peroxisome	30.52	31.79
Zm00001d045295_P001	Maize	extracellular	30.66	31.7
Zm00001d053127_P005	Maize	mitochondrion	29.51	31.02
Zm00001d023238_P002	Maize	plasma membrane	29.66	29.96
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	29.66	29.74
Zm00001d010943_P001	Maize	peroxisome	5.73	28.37
Zm00001d034832_P006	Maize	plastid	22.21	19.42

Protein Annotations

EnsemblPlants:Zm00001d023538_P002	EnsemblPlants:Zm00001d023538_T002	EnsemblPlantsGene:Zm00001d023538	EntrezGene:103640823	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272
PANTHER:PTHR43272:SF15	PFAM:PF00501	ProteinID:AQK39523.1	ProteinID:AQK39528.1	ScanProsite:PS00455	SEG:seg
SUPFAM:SSF56801	UniParc:UPI0002217A0A	UniProt:K7TMN5	MapMan:50.6.2	:	:

Description

Long chain acyl-CoA synthetase 9 chloroplastic

Coordinates

chr10:+:9347497..9371353

Molecular Weight (calculated)

76763.0 Da

IEP (calculated)

7.043

GRAVY (calculated)

-0.035

Length

698 amino acids

Sequence
(BLAST)

001: MNPYFVGILV PVAVSLLLRK RRKAQRMRGV PVEVGGEPGY AVRNYRFEQP VETHWEGVST LADLFEQSCK EYVYMPLLGT RKLISRETEA APGGRSFEKL
101: HLGEYEWKCY AECFKSVCNF SSGLIRVGHQ KNERVAIFAE TRAEWQIGLQ ACFRQNITVV TIYASLGEEA LCHSLNETEV TTVVCGQKEL KKLIDISGQL
201: DTVKRVVYIN EEGISTEVSL AQNCTSWIVE SFEEVTRLGA EAPVEANMPL PSDVAVIMYT SGSTGLPKGV MMTHRNVLAT LSAVMTIVPA LGSKDIYLAY
301: LPLAHILELA AEALMAAVGA SIGYGSPLTL IDTSNKIKKG TLGDASALKP TLMTAVPAIL DRIRDGVRKK VDTKGGIAKQ LFDIAYNRRL AAINGSWLGA
401: WGLEKLLWDT LVFGKVRAIL GGKIRFVLSG GAPLSGDTQR FINICLGAPI GQGYGLTETC AGGTFSEYDD TSVGRVGAPL PCSYIKLIDW PEGGYLTADL
501: PMPRGEIVIG GPNITKGYFK NEAKTNEVYK DDEKGMRWFY SGDIGRFHPD GCLEIIDRKK DIVKLQHGEY VSLGKVEAAL IVSPYVENIM IHADPFHNYC
601: VALVVAAHIE LESWASQQGI KYNDFSDLCQ KQEAVKEVLG SLAKAAKQAR LEKFEIPVKI KLIPEPWTPE SGLVTAALKL KREVIRKTYE NDLAELYA

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.