Factsheet for Os12t0168700-01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 1
peroxisome 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023538_P002	Maize	plastid	89.68	89.68
KXG23059	Sorghum	endoplasmic reticulum	89.54	89.54
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	87.25	87.25
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	87.25	87.25
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	87.25	87.25
TraesCS5D01G129800.1	Wheat	golgi	87.25	87.25
Os11t0169800-01	Rice	plastid	45.27	87.05
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	78.51	78.62
GSMUA_Achr11P...	Banana	endoplasmic reticulum	77.08	77.19
GSMUA_Achr1P13190_001	Banana	vacuole	69.77	75.86
Solyc11g018580.1.1	Tomato	plastid	65.33	74.75
VIT_18s0001g02810.t01	Wine grape	vacuole	74.5	74.61
PGSC0003DMT400002337	Potato	mitochondrion	74.21	74.43
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	60.17	74.07
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.78	73.3
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.78	73.3
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.64	73.16
AT1G77590.1	Thale cress	peroxisome, plastid	72.21	72.94
KRH53234	Soybean	mitochondrion	71.63	72.05
KRH18736	Soybean	peroxisome, plastid	71.2	71.41
KRH16338	Soybean	plastid, vacuole	61.75	66.62
Os05t0317200-01	Rice	plastid	65.47	62.95
Os01t0681200-01	Rice	plasma membrane	32.23	33.83
Os06t0158000-01	Rice	plasma membrane	28.51	32.36
Os05t0132100-02	Rice	plasma membrane	30.66	31.99
Os11t0558300-01	Rice	peroxisome	30.23	31.92
Os01t0655800-01	Rice	plasma membrane	29.37	30.15
Os11t0147000-01	Rice	peroxisome	30.37	29.9
Os12t0143900-01	Rice	peroxisome	29.8	29.42
Os03t0845500-01	Rice	plastid	22.78	21.2

Protein Annotations

Gene3D:3.40.50.12780	EntrezGene:4351610	MapMan:50.6.2	ProteinID:ABA95919.1	ProteinID:ABA95920.1	EMBL:AK065708
EMBL:AK065718	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:BAF29275.1	ProteinID:BAT16050.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:Os12g0168700	EnsemblPlants:Os12t0168700-01
PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF15	UniProt:Q2QX58	SUPFAM:SSF56801
UniParc:UPI0000681987	RefSeq:XP_015620747.1	SEG:seg	:	:	:

Description

Long-chain acyl-CoA synthetase 1AMP-dependent synthetase and ligase domain containing protein. (Os12t0168700-01);AMP-dependent synthetase and ligase domain containing protein. (Os12t0168700-02);Similar to LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9); long-chain-fatty-acid-CoA ligase. (Os12t0168700-03)

Coordinates

chr12:+:3483918..3489140

Molecular Weight (calculated)

76751.1 Da

IEP (calculated)

7.452

GRAVY (calculated)

-0.049

Length

698 amino acids

Sequence
(BLAST)

001: MNPYFVGLLV PIAVSLLLRK RRMVGKMRAL PVDVGGEPGY AIRNYRFKQP VETHWEGVTT LAELFEQSCK DYVNMPLLGT RKLISREQES SLDGRSFEKL
101: HLGEYDWKCY AEVFKSVCNF ASGLIRLGHQ KTDRVAIFAE TRAEWQIALQ ACFRQNITVV TIYASLGEEA LCHSLNETEV TTVVCGQKEL KKMIDISGQL
201: DTVKRVIYIN EEGISAEVSL AQKSTSWIIE PFEDVGRLGD TAPVDANMPL PSDVAVIMYT SGSTGLPKGV MMTHRNVLAT LSAVMTIVPE IGKKDVYLAY
301: LPLAHILELA AEALIAAVGA SIGYGSPLTL TDTSNKIKKG TLGDASALKP TLMTAVPAIL DRVRDGVRKK VDTKGGVAKQ LFDVAYNRRL AAVNGSWLGA
401: WGLEKLLWDM LVFKKVRAVL GGKIRFVLSG GAPLSGDTQR FINICLGVPI GQGYGLTETC AGGTFSEYDD PSVGRVGAPL PCSYIKLIDW SEGGYLTSDS
501: PMPRGEIVIG GPNVTKGYFK NEAKTNEVYK DDEKGMRWFY SGDIGRFHPD GCLEIIDRKK DIVKLQHGEY VSLGKVEAAL IVSPYVENIM IHADPFHSYC
601: VALVVAAHNE LENWASQQGV TYTDFVDLCQ KPEAVKEVLG SLSKAAKQAR LEKFEIPAKI KLISEPWTPE SGLVTAALKL KREVLRKTYE DDLAKLYA

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.