Factsheet for Os05t0317200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27640	Sorghum	peroxisome	88.98	88.98
TraesCS5D01G174000.1	Wheat	peroxisome	88.02	87.77
TraesCS5A01G169600.1	Wheat	golgi	88.02	87.77
TraesCS5B01G166400.1	Wheat	golgi	87.88	87.64
HORVU5Hr1G052100.13	Barley	peroxisome	88.71	87.62
Zm00001d052399_P007	Maize	peroxisome	87.6	87.6
Zm00001d005019_P004	Maize	plasma membrane	87.05	87.05
Os11t0169800-01	Rice	plastid	36.09	72.18
VIT_12s0057g01270.t01	Wine grape	peroxisome	70.39	71.07
Solyc07g045290.2.1	Tomato	plastid	70.11	70.11
PGSC0003DMT400044860	Potato	peroxisome	69.83	69.83
KRG89997	Soybean	endoplasmic reticulum	64.33	69.29
PGSC0003DMT400000868	Potato	peroxisome	69.42	68.95
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	68.73	68.83
CDY15082	Canola	peroxisome	67.77	68.72
KRH17725	Soybean	peroxisome	68.18	68.28
CDY66248	Canola	peroxisome	67.77	68.24
Bra013210.1-P	Field mustard	peroxisome	67.63	68.1
Solyc12g009040.1.1	Tomato	plastid	66.94	67.69
AT2G04350.1	Thale cress	peroxisome	66.53	67.08
Os12t0168700-01	Rice	vacuole	62.95	65.47
TraesCS3B01G570800.1	Wheat	peroxisome	18.32	64.88
Os11t0558300-01	Rice	peroxisome	30.44	33.43
Os01t0681200-01	Rice	plasma membrane	30.44	33.23
Os06t0158000-01	Rice	plasma membrane	27.96	33.01
Os05t0132100-02	Rice	plasma membrane	28.51	30.94
Os11t0147000-01	Rice	peroxisome	30.03	30.75
Os01t0655800-01	Rice	plasma membrane	28.51	30.44
Os12t0143900-01	Rice	peroxisome	29.61	30.41
Os03t0845500-01	Rice	plastid	22.59	21.87

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	EntrezGene:4338395	MapMan:50.6.2	ProteinID:AAV44023.1	EMBL:AK100521
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:BAF17091.1	ProteinID:BAS93333.1	GO:GO:0001676	GO:GO:0003674
GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005794	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536
GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EMBL:KC140118	EnsemblPlantsGene:Os05g0317200
EnsemblPlants:Os05t0317200-01	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF30	UniProt:Q5W6W7
SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI00004548C7	RefSeq:XP_015639433.1	RefSeq:XP_015639434.1	:

Description

LONG-CHAIN ACYL-COA SYNTHETASE 8AMP-dependent synthetase and ligase domain containing protein. (Os05t0317200-01)

Coordinates

chr5:+:14688251..14701323

Molecular Weight (calculated)

79883.5 Da

IEP (calculated)

8.016

GRAVY (calculated)

-0.123

Length

726 amino acids

Sequence
(BLAST)

001: MGENTGDNPN MSILQRIATS DVPLVKEYGL PGIIGAILLA VVIPIMLSSI FNKKGKKRAV QADVGGEAGL AMRNSRFSML VEVPWEGATT MAALFEMASK
101: KYPRHRCLGT RKLINREFVE SPDGRKFEKL HLGEYEWDTY AEAFSRACNF SSGLIKLGHQ RDSRAAIFAD TRTEWIIAAQ GCFRQNLTVV TIYASLGEDA
201: LVHSLNETQV STLICDSKQL KKLPAISSKL QSVKHVIYIE DEPVEAEVLN QMKHWTTFSF GEVEELGKTS HTDARLPSST DTAVIMYTSG STGLPKGVMI
301: THGNMVATTA AVMTIIPKLG TGDVYLAYLP LAHVFELAAE TVMLASGAAI GYGSALTMTD TSNKIKKGTK GDVSALKPTL MISVPAILDR IRDAVFKKVG
401: EKGGLTKKLF DIAYKRNLGA IEGSWFGSWA PERMIWDNLI FKPIRSMLGG RIRFVLCGGA PLSSDTQRFM NICLGVPVGQ GYGLTETCAG AAFSEWDDTS
501: VGRVGPPLPC CYVKLVSWEE GGYKISDSPM PRGEVVVGGY SITKGYFNNE AKTNEVYKVD ERGMRWFYTG DIGQFHPDGC LEIIDRKKDI VKLQHGEYVS
601: LGKVESALTT SNYVDSIMVY ADPFHNYCVA LVVPAHQALE QWAQNSGINY KNFDELCHND QAIKEVQQSL SKAAKAARLE KFEIPAKIVL LPEPWTPESG
701: LVTAALKLKR EQIKTKFKDD LGKLYH

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.