Factsheet for Solyc07g045290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044860	Potato	peroxisome	98.48	98.48
Solyc12g009040.1.1	Tomato	plastid	79.75	80.64
VIT_12s0057g01270.t01	Wine grape	peroxisome	73.69	74.41
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	71.07	71.17
CDY66248	Canola	peroxisome	70.52	71.01
CDY15082	Canola	peroxisome	69.97	70.95
Bra013210.1-P	Field mustard	peroxisome	70.25	70.74
KRH17725	Soybean	peroxisome	70.39	70.48
KRG89997	Soybean	endoplasmic reticulum	65.29	70.33
AT2G04350.1	Thale cress	peroxisome	69.56	70.14
Os05t0317200-01	Rice	plastid	70.11	70.11
TraesCS5B01G166400.1	Wheat	golgi	69.97	69.78
TraesCS5D01G174000.1	Wheat	peroxisome	69.83	69.64
TraesCS5A01G169600.1	Wheat	golgi	69.7	69.51
HORVU5Hr1G052100.13	Barley	peroxisome	69.56	68.71
KXG27640	Sorghum	peroxisome	68.32	68.32
Zm00001d005019_P004	Maize	plasma membrane	67.91	67.91
Zm00001d052399_P007	Maize	peroxisome	67.49	67.49
Solyc11g018580.1.1	Tomato	plastid	54.96	65.41
TraesCS3B01G570800.1	Wheat	peroxisome	15.15	53.66
Solyc08g008310.2.1	Tomato	peroxisome	29.34	35.68
Solyc08g082280.2.1	Tomato	nucleus, plastid	30.58	33.74
Solyc01g109180.2.1	Tomato	nucleus	29.89	32.93
Solyc01g095750.2.1	Tomato	peroxisome	29.89	32.83
Solyc09g075790.2.1	Tomato	peroxisome	25.62	29.62
Solyc01g099100.2.1	Tomato	plastid	28.37	29.6
Solyc09g075770.1.1	Tomato	peroxisome	27.82	28.94
Solyc09g092450.2.1	Tomato	plastid	20.39	20.47

Protein Annotations

EnsemblPlants:Solyc07g045290.2.1	EnsemblPlantsGene:Solyc07g045290.2	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
PANTHER:PTHR43272	PANTHER:PTHR43272:SF30	PFAM:PF00501	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801
TMHMM:TMhelix	UniParc:UPI000276CA10	UniProt:K4CET6	MapMan:50.6.2	:	:

Description

No Description!

Coordinates

chr7:+:58393554..58401187

Molecular Weight (calculated)

79832.4 Da

IEP (calculated)

8.176

GRAVY (calculated)

-0.065

Length

726 amino acids

Sequence
(BLAST)

001: MEDSEGSNPY MSILKRLASY DYISKNYGSS GIAGAFFIAI IIPTFLSILL MGKKKAKQRG VPVQVGGEPG LAMRNAKSAR LVEVPWEGAT TVAALFEQSC
101: KKHSSYRCLG SRKLVSRDFV TASDGRKFEK LHLGEYQWES YGQVFDRTCN FASGLISLGH DVDTRAAIFA ESRAEWLIAF QGCFRQNITV VTIYASLGDD
201: ALIYSLNETQ VSTLICDAKQ LKKVASVSSS LKTIKNVIYF EDDETATDST NIDSWRVSSF SEVEKLGRNS PIQARLPVKE DIAVIMYTSG STGLPKGVMI
301: THGNIVATAA AVMTVIPKLG TSDVYLAYLP LAHVFELAAE TVMLTAGACI GYGSALTLTD TSNKVMKGTK GDATVLKPTL MAAVPAILDR VRDGVMKKVE
401: EKAGSAKKLF HIAFNRRLAA MEGSWFGAWG LEKQLWDIII FKKVRAVLGG DIRFMLCGGA PLSGDTQRFI NICMGAPIGQ GYGLTETFAG AAFSEWDDPS
501: VGRVGPPLPC CYIKLITWEE GGYRIVDKPM PRGEVVVGGC SITAGYFNNE EKTNEVYKVD ETGMRWFYTG DIGRFHPDGC IEIIDRKKDI VKLQHGEYIS
601: LGKVEAALLS SNYVESIMVY ADPFHNYCVA LVVPSRPVLE KWAQENGIQH KDFSELCDKV ESVNEIKQSL SKVAKAARLD KFELPAKIKL IPESWTPESG
701: LVTAALKLKR EPLKARYKNE LEKLYQ

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.