Factsheet for Solyc08g082280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g008310.2.1	Tomato	peroxisome	76.29	84.09
VIT_02s0025g01410.t01	Wine grape	peroxisome	79.64	79.15
Bra013735.1-P	Field mustard	peroxisome	73.1	77.21
KRH27846	Soybean	peroxisome	77.66	77.07
KRH77642	Soybean	endoplasmic reticulum	78.42	76.9
CDY47618	Canola	peroxisome	77.81	76.76
CDY03515	Canola	peroxisome	77.66	76.61
AT4G23850.1	Thale cress	peroxisome	75.99	75.08
KRH60037	Soybean	peroxisome	74.62	73.83
Bra033159.1-P	Field mustard	peroxisome	67.48	73.51
AT4G11030.1	Thale cress	peroxisome	73.86	72.97
Bra035259.1-P	Field mustard	peroxisome	73.86	72.97
CDX86825	Canola	peroxisome	73.86	72.97
CDX94232	Canola	peroxisome	70.36	70.05
CDY25270	Canola	peroxisome	70.06	69.95
AT1G64400.1	Thale cress	cytosol, peroxisome, plastid	70.06	69.32
KRH41306	Soybean	peroxisome	26.6	68.36
Solyc01g095750.2.1	Tomato	peroxisome	67.48	67.17
KXG27302	Sorghum	cytosol	5.47	66.67
CDY40856	Canola	peroxisome	73.4	65.89
KRG94065	Soybean	vacuole	16.72	60.11
CDY46530	Canola	peroxisome	70.97	59.41
Solyc01g109180.2.1	Tomato	nucleus	57.9	57.81
Bra027700.1-P	Field mustard	peroxisome	71.43	56.9
CDY64879	Canola	peroxisome	71.43	48.96
Solyc09g075790.2.1	Tomato	peroxisome	36.17	37.9
Solyc01g099100.2.1	Tomato	plastid	39.82	37.64
Solyc09g075770.1.1	Tomato	peroxisome	39.36	37.11
Solyc11g018580.1.1	Tomato	plastid	30.09	32.46
Solyc07g045290.2.1	Tomato	plastid	33.74	30.58
Solyc12g009040.1.1	Tomato	plastid	32.98	30.22
Solyc09g092450.2.1	Tomato	plastid	25.68	23.37

Protein Annotations

EnsemblPlants:Solyc08g082280.2.1	EnsemblPlantsGene:Solyc08g082280.2	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF9	PFAM:PF00501
ScanProsite:PS00455	SUPFAM:SSF56801	UniParc:UPI000276C6AC	UniProt:K4CPM4	MapMan:50.6.2	:

Description

No Description!

Coordinates

chr8:-:65113956..65123714

Molecular Weight (calculated)

73323.6 Da

IEP (calculated)

6.779

GRAVY (calculated)

-0.130

Length

658 amino acids

Sequence
(BLAST)

001: MAPEKFIVEV EPAKPAKDGR PSMGPVYRSL FAKDGFPPPI PGLDSCWDIF RLSVEKYPNN RMLGHREIVD GKPGKYVWMS YKEVYDIVIK VGNSIRSCGV
101: NKGDKCGIYG ANCAEWIISM EACNAHGLYC VPLYDTLGAG AVEFIISHAE VTIAFVEEKK LPELLKTFPD ASKYLKTIVS FGKVTPQQKE EVEKFGVVLY
201: SWDEFLQLGS EKQFDLPVKK KEDICTIMYT SGTTGDPKGV LISNTSIVTL IAGVKRLLGS VNESLTVDDV YLSYLPLAHI FDRVIEECFI NHGASIGFWR
301: GDVKLLTEDI GELKPTIFCA VPRVLDRIYS GLQHKITSGG MLKSTLFNLA YAYKHRNLKK GQSHVEASPL SDKVVFSKVK EGLGGRVRLI LSGAAPLASH
401: VEAFLRVVGC CHVLQGYGLT ETCAGTFVSL PNHYDMLGTV GPPVPNVDVC LESVPEMSYD ALSSTPRGEV CVRGDTLFSG YFKREDLTKE VMIDGWFHTG
501: DVGEWQPNGS LKIIDRKKNI FKLSQGEYVA VENLENIYGD NPVIDSIWIY GNSFESFLVA VINPNERAIE HWAEHNGISG DFASLCENAK VKEYIIGELA
601: KTGKEKKLKG FEFIKAVHLD PLPFDMERDL LTPTFKKKRP QMLKFYKDVI DNMYKSTK

Best Arabidopsis Sequence Match ( AT4G23850.1 )
(BLAST)

001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG

Arabidopsis Description

LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.