Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY46530 | Canola | peroxisome | 91.13 | 77.1 |
Bra027700.1-P | Field mustard | peroxisome | 91.58 | 73.73 |
AT4G23850.1 | Thale cress | peroxisome | 72.48 | 72.37 |
AT4G11030.1 | Thale cress | peroxisome | 71.13 | 71.02 |
KRH77642 | Soybean | endoplasmic reticulum | 71.43 | 70.79 |
VIT_02s0025g01410.t01 | Wine grape | peroxisome | 69.92 | 70.24 |
KRH27846 | Soybean | peroxisome | 69.92 | 70.14 |
Solyc08g082280.2.1 | Tomato | nucleus, plastid | 69.32 | 70.06 |
Solyc08g008310.2.1 | Tomato | peroxisome | 62.11 | 69.18 |
GSMUA_Achr3P32060_001 | Banana | peroxisome | 67.97 | 69.01 |
TraesCS3B01G266100.1 | Wheat | golgi | 68.27 | 69.0 |
HORVU3Hr1G059140.1 | Barley | peroxisome | 68.27 | 69.0 |
TraesCS3D01G237900.1 | Wheat | peroxisome | 68.12 | 68.84 |
GSMUA_Achr6P14370_001 | Banana | peroxisome | 67.67 | 68.7 |
Zm00001d044016_P001 | Maize | mitochondrion | 67.22 | 68.24 |
KRH60037 | Soybean | peroxisome | 67.97 | 67.97 |
TraesCS3A01G237700.3 | Wheat | peroxisome | 67.37 | 66.77 |
KXG27302 | Sorghum | cytosol | 5.41 | 66.67 |
TraesCS5D01G144200.2 | Wheat | peroxisome | 66.77 | 66.57 |
TraesCS5B01G147300.1 | Wheat | peroxisome | 66.17 | 66.47 |
TraesCS5A01G148700.1 | Wheat | peroxisome | 66.62 | 66.42 |
Os01t0681200-01 | Rice | plasma membrane | 65.86 | 65.86 |
HORVU5Hr1G046950.26 | Barley | peroxisome | 67.07 | 65.49 |
Zm00001d043851_P001 | Maize | mitochondrion | 64.96 | 65.06 |
PGSC0003DMT400014954 | Potato | cytosol | 11.13 | 63.79 |
TraesCS7D01G110700.1 | Wheat | peroxisome | 62.11 | 63.54 |
CDY64879 | Canola | peroxisome | 91.58 | 63.44 |
TraesCS7B01G012700.1 | Wheat | peroxisome | 61.65 | 63.08 |
Os06t0158000-01 | Rice | plasma membrane | 58.2 | 62.93 |
TraesCS7A01G115900.1 | Wheat | peroxisome | 59.55 | 62.76 |
KRH41306 | Soybean | peroxisome | 23.91 | 62.11 |
Zm00001d045295_P001 | Maize | extracellular | 62.71 | 61.78 |
Os01t0655800-01 | Rice | plasma membrane | 63.16 | 61.76 |
KRG94065 | Soybean | vacuole | 15.94 | 57.92 |
HORVU7Hr1G024350.1 | Barley | endoplasmic reticulum, vacuole | 61.35 | 57.14 |
AT1G49430.1 | Thale cress | peroxisome | 53.08 | 53.08 |
AT2G47240.2 | Thale cress | peroxisome | 48.72 | 49.09 |
AT3G05970.1 | Thale cress | plastid | 38.65 | 36.66 |
AT5G27600.1 | Thale cress | peroxisome, plastid | 37.74 | 35.86 |
AT2G47245.1 | Thale cress | endoplasmic reticulum | 6.92 | 35.38 |
AT1G77590.1 | Thale cress | peroxisome, plastid | 31.43 | 30.25 |
AT2G04350.1 | Thale cress | peroxisome | 31.73 | 29.31 |
AT3G23790.1 | Thale cress | plastid | 23.91 | 22.02 |
AT4G14070.1 | Thale cress | plastid | 23.31 | 21.32 |
Protein Annotations
Gene3D:3.40.50.12780 | MapMan:50.6.2 | EntrezGene:842748 | ProteinID:AAG51719.1 | ProteinID:AEE34237.1 | EMBL:AF503753 |
InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig | ArrayExpress:AT1G64400 | EnsemblPlantsGene:AT1G64400 | RefSeq:AT1G64400 | TAIR:AT1G64400 |
RefSeq:AT1G64400-TAIR-G | EnsemblPlants:AT1G64400.1 | TAIR:AT1G64400.1 | EMBL:AY039935 | EMBL:AY079314 | Unigene:At.24316 |
GO:GO:0000166 | GO:GO:0001676 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004467 | GO:GO:0005488 |
GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
GO:GO:0006629 | GO:GO:0006631 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016874 |
GO:GO:0102391 | Symbol:LACS3 | RefSeq:NP_176622.1 | PFAM:PF00501 | PO:PO:0000013 | PO:PO:0000037 |
PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | ScanProsite:PS00455 | PANTHER:PTHR43272 |
PANTHER:PTHR43272:SF9 | UniProt:Q9C7W4 | SUPFAM:SSF56801 | UniParc:UPI000004BF2E | SEG:seg | : |
Description
LACS3Long chain acyl-CoA synthetase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7W4]
Coordinates
chr1:-:23915570..23919835
Molecular Weight (calculated)
74755.3 Da
IEP (calculated)
7.707
GRAVY (calculated)
-0.241
Length
665 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGRYIVEV EKGKQGVDGG SPSVGPVYRS IYAKDGFPEP PDDLVSAWDI FRLSVEKSPN NPMLGRREIV DGKAGKYVWQ TYKEVHNVVI KLGNSIRTIG
101: VGKGDKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA GAIEFIICHA EVSLAFAEEN KISELLKTAP KSTKYLKYIV SFGEVTNNQR VEAERHRLTI
201: YSWDQFLKLG EGKHYELPEK RRSDVCTIMY TSGTTGDPKG VLLTNESIIH LLEGVKKLLK TIDEELTSKD VYLSYLPLAH IFDRVIEELC IYEAASIGFW
301: RGDVKILIED IAALKPTVFC AVPRVLERIY TGLQQKLSDG GFVKKKLFNF AFKYKHKNME KGQPHEQASP IADKIVFKKV KEGLGGNVRL ILSGAAPLAA
401: HIESFLRVVA CAHVLQGYGL TESCGGTFVS IPNELSMLGT VGPPVPNVDI RLESVPEMGY DALASNPRGE ICIRGKTLFS GYYKREDLTQ EVFIDGWLHT
501: GDVGEWQPDG AMKIIDRKKN IFKLSQGEYV AVENLENIYS HVAAIESIWV YGNSYESYLV AVVCPSKIQI EHWAKEHKVS GDFESICRNQ KTKEFVLGEF
601: NRVAKDKKLK GFELIKGVHL DTVPFDMERD LITPSYKMKR PQLLKYYQKE IDEMYKKNRE VQLRV
101: VGKGDKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA GAIEFIICHA EVSLAFAEEN KISELLKTAP KSTKYLKYIV SFGEVTNNQR VEAERHRLTI
201: YSWDQFLKLG EGKHYELPEK RRSDVCTIMY TSGTTGDPKG VLLTNESIIH LLEGVKKLLK TIDEELTSKD VYLSYLPLAH IFDRVIEELC IYEAASIGFW
301: RGDVKILIED IAALKPTVFC AVPRVLERIY TGLQQKLSDG GFVKKKLFNF AFKYKHKNME KGQPHEQASP IADKIVFKKV KEGLGGNVRL ILSGAAPLAA
401: HIESFLRVVA CAHVLQGYGL TESCGGTFVS IPNELSMLGT VGPPVPNVDI RLESVPEMGY DALASNPRGE ICIRGKTLFS GYYKREDLTQ EVFIDGWLHT
501: GDVGEWQPDG AMKIIDRKKN IFKLSQGEYV AVENLENIYS HVAAIESIWV YGNSYESYLV AVVCPSKIQI EHWAKEHKVS GDFESICRNQ KTKEFVLGEF
601: NRVAKDKKLK GFELIKGVHL DTVPFDMERD LITPSYKMKR PQLLKYYQKE IDEMYKKNRE VQLRV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.