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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • plastid 1
  • peroxisome 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY46530 Canola peroxisome 91.13 77.1
Bra027700.1-P Field mustard peroxisome 91.58 73.73
AT4G23850.1 Thale cress peroxisome 72.48 72.37
AT4G11030.1 Thale cress peroxisome 71.13 71.02
KRH77642 Soybean endoplasmic reticulum 71.43 70.79
VIT_02s0025g01410.t01 Wine grape peroxisome 69.92 70.24
KRH27846 Soybean peroxisome 69.92 70.14
Solyc08g082280.2.1 Tomato nucleus, plastid 69.32 70.06
Solyc08g008310.2.1 Tomato peroxisome 62.11 69.18
GSMUA_Achr3P32060_001 Banana peroxisome 67.97 69.01
TraesCS3B01G266100.1 Wheat golgi 68.27 69.0
HORVU3Hr1G059140.1 Barley peroxisome 68.27 69.0
TraesCS3D01G237900.1 Wheat peroxisome 68.12 68.84
GSMUA_Achr6P14370_001 Banana peroxisome 67.67 68.7
Zm00001d044016_P001 Maize mitochondrion 67.22 68.24
KRH60037 Soybean peroxisome 67.97 67.97
TraesCS3A01G237700.3 Wheat peroxisome 67.37 66.77
KXG27302 Sorghum cytosol 5.41 66.67
TraesCS5D01G144200.2 Wheat peroxisome 66.77 66.57
TraesCS5B01G147300.1 Wheat peroxisome 66.17 66.47
TraesCS5A01G148700.1 Wheat peroxisome 66.62 66.42
Os01t0681200-01 Rice plasma membrane 65.86 65.86
HORVU5Hr1G046950.26 Barley peroxisome 67.07 65.49
Zm00001d043851_P001 Maize mitochondrion 64.96 65.06
PGSC0003DMT400014954 Potato cytosol 11.13 63.79
TraesCS7D01G110700.1 Wheat peroxisome 62.11 63.54
CDY64879 Canola peroxisome 91.58 63.44
TraesCS7B01G012700.1 Wheat peroxisome 61.65 63.08
Os06t0158000-01 Rice plasma membrane 58.2 62.93
TraesCS7A01G115900.1 Wheat peroxisome 59.55 62.76
KRH41306 Soybean peroxisome 23.91 62.11
Zm00001d045295_P001 Maize extracellular 62.71 61.78
Os01t0655800-01 Rice plasma membrane 63.16 61.76
KRG94065 Soybean vacuole 15.94 57.92
HORVU7Hr1G024350.1 Barley endoplasmic reticulum, vacuole 61.35 57.14
AT1G49430.1 Thale cress peroxisome 53.08 53.08
AT2G47240.2 Thale cress peroxisome 48.72 49.09
AT3G05970.1 Thale cress plastid 38.65 36.66
AT5G27600.1 Thale cress peroxisome, plastid 37.74 35.86
AT2G47245.1 Thale cress endoplasmic reticulum 6.92 35.38
AT1G77590.1 Thale cress peroxisome, plastid 31.43 30.25
AT2G04350.1 Thale cress peroxisome 31.73 29.31
AT3G23790.1 Thale cress plastid 23.91 22.02
AT4G14070.1 Thale cress plastid 23.31 21.32
Protein Annotations
Gene3D:3.40.50.12780MapMan:50.6.2EntrezGene:842748ProteinID:AAG51719.1ProteinID:AEE34237.1EMBL:AF503753
InterPro:AMP-binding_CSInterPro:AMP-dep_Synth/LigArrayExpress:AT1G64400EnsemblPlantsGene:AT1G64400RefSeq:AT1G64400TAIR:AT1G64400
RefSeq:AT1G64400-TAIR-GEnsemblPlants:AT1G64400.1TAIR:AT1G64400.1EMBL:AY039935EMBL:AY079314Unigene:At.24316
GO:GO:0000166GO:GO:0001676GO:GO:0003674GO:GO:0003824GO:GO:0004467GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0006629GO:GO:0006631GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016874
GO:GO:0102391Symbol:LACS3RefSeq:NP_176622.1PFAM:PF00501PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195ScanProsite:PS00455PANTHER:PTHR43272
PANTHER:PTHR43272:SF9UniProt:Q9C7W4SUPFAM:SSF56801UniParc:UPI000004BF2ESEG:seg:
Description
LACS3Long chain acyl-CoA synthetase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7W4]
Coordinates
chr1:-:23915570..23919835
Molecular Weight (calculated)
74755.3 Da
IEP (calculated)
7.707
GRAVY (calculated)
-0.241
Length
665 amino acids
Sequence
(BLAST)
001: MATGRYIVEV EKGKQGVDGG SPSVGPVYRS IYAKDGFPEP PDDLVSAWDI FRLSVEKSPN NPMLGRREIV DGKAGKYVWQ TYKEVHNVVI KLGNSIRTIG
101: VGKGDKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA GAIEFIICHA EVSLAFAEEN KISELLKTAP KSTKYLKYIV SFGEVTNNQR VEAERHRLTI
201: YSWDQFLKLG EGKHYELPEK RRSDVCTIMY TSGTTGDPKG VLLTNESIIH LLEGVKKLLK TIDEELTSKD VYLSYLPLAH IFDRVIEELC IYEAASIGFW
301: RGDVKILIED IAALKPTVFC AVPRVLERIY TGLQQKLSDG GFVKKKLFNF AFKYKHKNME KGQPHEQASP IADKIVFKKV KEGLGGNVRL ILSGAAPLAA
401: HIESFLRVVA CAHVLQGYGL TESCGGTFVS IPNELSMLGT VGPPVPNVDI RLESVPEMGY DALASNPRGE ICIRGKTLFS GYYKREDLTQ EVFIDGWLHT
501: GDVGEWQPDG AMKIIDRKKN IFKLSQGEYV AVENLENIYS HVAAIESIWV YGNSYESYLV AVVCPSKIQI EHWAKEHKVS GDFESICRNQ KTKEFVLGEF
601: NRVAKDKKLK GFELIKGVHL DTVPFDMERD LITPSYKMKR PQLLKYYQKE IDEMYKKNRE VQLRV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.