Factsheet for TraesCS3B01G266100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G237900.1	Wheat	peroxisome	99.39	99.39
HORVU3Hr1G059140.1	Barley	peroxisome	98.78	98.78
TraesCS3A01G237700.3	Wheat	peroxisome	97.57	95.68
EES01192	Sorghum	peroxisome	89.67	90.08
Zm00001d044016_P001	Maize	mitochondrion	88.75	89.16
Os01t0655800-01	Rice	plasma membrane	84.19	81.47
VIT_02s0025g01410.t01	Wine grape	peroxisome	77.2	76.74
KRH27846	Soybean	peroxisome	74.01	73.45
TraesCS5B01G147300.1	Wheat	peroxisome	73.4	72.96
GSMUA_Achr6P14370_001	Banana	peroxisome	72.19	72.52
KRH77642	Soybean	endoplasmic reticulum	73.71	72.28
Bra013735.1-P	Field mustard	peroxisome	68.39	72.23
CDY47618	Canola	peroxisome	72.8	71.81
CDY03515	Canola	peroxisome	72.64	71.66
AT4G23850.1	Thale cress	peroxisome	70.82	69.97
Bra033159.1-P	Field mustard	peroxisome	63.53	69.21
CDX86825	Canola	peroxisome	69.45	68.62
Bra035259.1-P	Field mustard	peroxisome	69.45	68.62
KRH60037	Soybean	peroxisome	69.15	68.42
AT1G64400.1	Thale cress	cytosol, peroxisome, plastid	69.0	68.27
AT4G11030.1	Thale cress	peroxisome	67.33	66.52
TraesCS7B01G012700.1	Wheat	peroxisome	65.65	66.46
CDY25270	Canola	peroxisome	65.81	65.71
CDX94232	Canola	peroxisome	65.81	65.51
CDY40856	Canola	peroxisome	69.3	62.21
KRH41306	Soybean	peroxisome	23.4	60.16
CDY46530	Canola	peroxisome	69.15	57.89
TraesCS5B01G415100.1	Wheat	peroxisome	57.45	57.1
KRG94065	Soybean	vacuole	15.5	55.74
Bra027700.1-P	Field mustard	peroxisome	69.6	55.45
CDY64879	Canola	peroxisome	69.6	47.71
TraesCS1B01G093600.1	Wheat	peroxisome	47.72	46.87
TraesCS4B01G133700.3	Wheat	peroxisome	40.58	38.36
TraesCS5B01G131800.3	Wheat	peroxisome	40.12	37.61
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	33.28	31.42
TraesCS3B01G570800.1	Wheat	peroxisome	9.73	31.22
TraesCS5B01G166400.1	Wheat	golgi	33.74	30.49
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	32.07	30.23
TraesCS5B01G536200.1	Wheat	plastid	22.95	20.83
TraesCS5B01G536300.1	Wheat	mitochondrion, plastid	23.4	20.4

Protein Annotations

EnsemblPlants:TraesCS3B01G266100.1	EnsemblPlantsGene:TraesCS3B01G266100	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF9	PFAM:PF00501
ScanProsite:PS00455	SUPFAM:SSF56801	TIGR:cd05927	MapMan:50.6.2	:	:

Description

No Description!

Coordinates

chr3B:+:426958510..426966785

Molecular Weight (calculated)

72960.8 Da

IEP (calculated)

5.600

GRAVY (calculated)

-0.102

Length

658 amino acids

Sequence
(BLAST)

001: MAEMQHVVKV EEGRPAADGR PSVGPTYRSA FARDGFPAPV DGLDSCYDIF RMAVEKYPNN RMLGHREIVD GKAGAYVWRT YKEVFGIANK IGNSIRSCGL
101: TKGSRCGIYG ANSPEWIITM EACNAHGVYC VPLYDTLGAG AIEFILCHAE VEIAFAEEKK VAELLKTFPK STEFLKTIVS FGKVTQEQKE EVSKCGLSIY
201: SWDEFISLAG DQEFDLPVNQ RTDICTIMYT SGTTGDPKGV LISNASIICL IAGVDRLLNS VNERLEETDV YMSYLPLAHI FDRVVEELFM FHGASIGFWR
301: GDVKLLVEDI GTLKPTILCA VPRVLDRIFS GLQAKISAGG FIKSTMFNLA YKFKQFRMMR GAKHNEAAAI CDKVVFSKVK EGLGGNVRVI LSGAAPLATH
401: VEEYLRVVTC AHVLQGYGLT ETCAGSFVSL PNQMSMIGTV GPPVPNIDAR LESVPDMNYD ALASTPRGEI CIKGETLFSG YYRREDLTEE VLVDGWFHTG
501: DIGEWQPDGS MKIIDRKKNI FKLSQGEYVA VENLENIYGV VSAIDSIWVY GNSFESFLVA VVNPNKEALE SWAEANGISG DFEALCENPK AKEYILGELS
601: KTGKEKKLKG FEFIRAVHLD PVPFDMERDL ITPTYKRKRP QLLKYYQGAI DNMYKSAK

Best Arabidopsis Sequence Match ( AT4G23850.1 )
(BLAST)

001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG

Arabidopsis Description

LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.