Factsheet for Bra013735.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47618	Canola	peroxisome	98.88	92.35
CDY03515	Canola	peroxisome	98.56	92.05
AT4G23850.1	Thale cress	peroxisome	92.78	86.79
Bra033159.1-P	Field mustard	peroxisome	79.13	81.62
Bra035259.1-P	Field mustard	peroxisome	81.7	76.43
Solyc08g008310.2.1	Tomato	peroxisome	72.71	75.88
Solyc08g082280.2.1	Tomato	nucleus, plastid	77.21	73.1
VIT_02s0025g01410.t01	Wine grape	peroxisome	77.05	72.51
KXG27302	Sorghum	cytosol	6.26	72.22
KRH27846	Soybean	peroxisome	74.32	69.83
KRH77642	Soybean	endoplasmic reticulum	74.8	69.45
GSMUA_Achr3P32060_001	Banana	peroxisome	72.39	68.86
GSMUA_Achr6P14370_001	Banana	peroxisome	72.39	68.86
TraesCS3D01G237900.1	Wheat	peroxisome	72.23	68.39
TraesCS3B01G266100.1	Wheat	golgi	72.23	68.39
HORVU3Hr1G059140.1	Barley	peroxisome	72.23	68.39
Zm00001d044016_P001	Maize	mitochondrion	71.27	67.79
KRH60037	Soybean	peroxisome	72.23	67.67
TraesCS3A01G237700.3	Wheat	peroxisome	71.59	66.47
Zm00001d043851_P001	Maize	mitochondrion	70.14	65.81
TraesCS5B01G147300.1	Wheat	peroxisome	69.66	65.56
Os01t0681200-01	Rice	plasma membrane	69.82	65.41
TraesCS5A01G148700.1	Wheat	peroxisome	69.82	65.22
TraesCS5D01G144200.2	Wheat	peroxisome	69.66	65.07
Os01t0655800-01	Rice	plasma membrane	70.31	64.41
HORVU5Hr1G046950.26	Barley	peroxisome	69.66	63.73
TraesCS7D01G110700.1	Wheat	peroxisome	66.29	63.54
TraesCS7B01G012700.1	Wheat	peroxisome	65.33	62.62
TraesCS7A01G115900.1	Wheat	peroxisome	63.4	62.6
Os06t0158000-01	Rice	plasma membrane	60.67	61.46
Zm00001d045295_P001	Maize	extracellular	66.13	61.04
KRG94065	Soybean	vacuole	17.34	59.02
HORVU7Hr1G024350.1	Barley	endoplasmic reticulum, vacuole	65.49	57.14
KRH41306	Soybean	peroxisome	22.79	55.47
Bra027700.1-P	Field mustard	peroxisome	73.35	55.33
Bra032284.1-P	Field mustard	peroxisome	53.29	49.85
PGSC0003DMT400014954	Potato	cytosol	8.67	46.55
Bra021392.1-P	Field mustard	peroxisome	49.12	46.36
Bra004467.1-P	Field mustard	peroxisome	49.12	43.9
Bra009951.1-P	Field mustard	peroxisome	39.81	35.53
Bra020793.1-P	Field mustard	plastid	35.31	34.98
Bra001177.1-P	Field mustard	plastid	38.52	34.48
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	32.91	29.58
Bra013210.1-P	Field mustard	peroxisome	33.23	28.71
Bra001919.1-P	Field mustard	plastid	24.24	21.03
Bra032757.1-P	Field mustard	plastid	23.27	20.17

Protein Annotations

Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:Bra013735	EnsemblPlants:Bra013735.1
EnsemblPlants:Bra013735.1-P	GO:GO:0001676	GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	UniProt:M4DB75	PFAM:PF00501
ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF9	SUPFAM:SSF56801	UniParc:UPI0002545ED6	SEG:seg

Description

AT4G23850 (E=0.0) | long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase

Coordinates

chrA01:-:7494473..7498479

Molecular Weight (calculated)

69639.2 Da

IEP (calculated)

6.387

GRAVY (calculated)

-0.107

Length

623 amino acids

Sequence
(BLAST)

001: MDSCWDVFRM AVEKYPNNQM LGRREIVDGK PGKYVWQTYQ EVYDIVIKLG NALRNCGVEE QAKCGIYGAN SPEWIISMEA CNAHGLYCVP LYDTLGAGAV
101: EFIITHSEVS IVFVEEKKIS ELFKTCPNAT EYMKTVVSFG GVTREQKEAA ETFGLVIYAW DDFLKLGEEK QFDLPIKKKS DICTIMYTSG TTGDPKGVMI
201: SNESIVTLIA GVIRLLKSAN EALTVKDVYL SYLPLAHIFD RVIEECFIQH GAAIGFWRGD VKLLIEDLGE LKPTIFCAVP RVLDRVYSGL QQKLAAGGFF
301: KKFMFDSAFS FKYGHMKKGQ SHVEASPLCD KLVFSKVKQG LGGNVRIILS GAAPLASHVE SFLRVVACCH VLQGYGLTES CAGTFVSLPD RLDMLGTVGP
401: PVPNVDIRLE SVPEMEYDAL ASTPRGEICI RGKTLFSGYY KREDLTKEVL IDGWLHTGDV GEWQPNGSMK IIDRKKNIFK LSQGEYVAVE NLENIYGEVQ
501: AVDSVWVYGN SFESFLIAVA NPNQHILEKW AAENGVSGDY NALCQNAKAK EFILGELVKM GKEKKMKGFE IIKAVHLDPV PFDMERDLLT PTYKKKRPQL
601: LKHYQSVIDE MYKTTNESLA SRK

Best Arabidopsis Sequence Match ( AT4G23850.1 )
(BLAST)

001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG

Arabidopsis Description

LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.