Factsheet for Zm00001d043851_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01271	Sorghum	peroxisome	95.18	95.47
Os01t0681200-01	Rice	plasma membrane	88.1	87.97
TraesCS5B01G147300.1	Wheat	peroxisome	85.24	85.5
TraesCS5A01G148700.1	Wheat	peroxisome	85.54	85.16
TraesCS5D01G144200.2	Wheat	peroxisome	85.24	84.86
HORVU5Hr1G046950.26	Barley	peroxisome	85.24	83.11
GSMUA_Achr3P32060_001	Banana	peroxisome	74.55	75.57
VIT_02s0025g01410.t01	Wine grape	peroxisome	73.8	74.02
Zm00001d044016_P001	Maize	mitochondrion	70.93	71.91
KRH27846	Soybean	peroxisome	71.08	71.19
KRH77642	Soybean	endoplasmic reticulum	71.54	70.79
Bra013735.1-P	Field mustard	peroxisome	65.81	70.14
KRH60037	Soybean	peroxisome	69.73	69.62
Bra033159.1-P	Field mustard	peroxisome	63.1	69.37
CDY47618	Canola	peroxisome	68.52	68.22
CDY03515	Canola	peroxisome	68.37	68.07
Zm00001d045295_P001	Maize	extracellular	68.37	67.26
CDX86825	Canola	peroxisome	67.32	67.12
Bra035259.1-P	Field mustard	peroxisome	67.32	67.12
AT4G23850.1	Thale cress	peroxisome	67.32	67.12
AT4G11030.1	Thale cress	peroxisome	66.11	65.92
AT1G64400.1	Thale cress	cytosol, peroxisome, plastid	65.06	64.96
CDX94232	Canola	peroxisome	64.46	64.75
CDY25270	Canola	peroxisome	63.7	64.19
CDY40856	Canola	peroxisome	67.47	61.12
KRH41306	Soybean	peroxisome	23.04	59.77
KRG94065	Soybean	vacuole	16.11	58.47
Zm00001d053127_P005	Maize	mitochondrion	56.93	56.93
CDY46530	Canola	peroxisome	67.32	56.87
Bra027700.1-P	Field mustard	peroxisome	67.77	54.48
Zm00001d010943_P001	Maize	peroxisome	10.54	49.65
Zm00001d024723_P001	Maize	peroxisome	48.64	48.21
CDY64879	Canola	peroxisome	67.77	46.88
Zm00001d023238_P002	Maize	plasma membrane	39.61	38.06
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	38.25	36.49
Zm00001d023538_P002	Maize	plastid	33.28	31.66
Zm00001d053009_P009	Maize	plastid	33.28	31.66
Zm00001d005019_P004	Maize	plasma membrane	31.93	29.2
Zm00001d052399_P007	Maize	peroxisome	31.48	28.79
Zm00001d034832_P006	Maize	plastid	21.84	18.17

Protein Annotations

EMBL:BT067478	EnsemblPlants:Zm00001d043851_P001	EnsemblPlants:Zm00001d043851_T001	EnsemblPlantsGene:Zm00001d043851	EntrezGene:100383523	Gene3D:3.40.50.12780
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
PANTHER:PTHR43272	PANTHER:PTHR43272:SF9	PFAM:PF00501	ProteinID:ONM39297.1	ScanProsite:PS00455	SEG:seg
SUPFAM:SSF56801	UniParc:UPI000195CA04	UniProt:C0PGQ9	MapMan:50.6.2	:	:

Description

Long chain acyl-CoA synthetase 5

Coordinates

chr3:+:212034975..212041814

Molecular Weight (calculated)

73419.4 Da

IEP (calculated)

6.573

GRAVY (calculated)

-0.180

Length

664 amino acids

Sequence
(BLAST)

001: MVTGSMKHLV QVEPAREAAA EGGAPSAGPT YRCAAGGNAA SPPAVPGLEC CWDIFRLSVE KCPDNKMLGR REIVHGKAGS YTWLTYKQVY DTVLDVGSAI
101: RSCGVGKGGR CGIYGANSPE WVISMQACNA HGIYCVPLYD TLGAGAVEFV LCHAEVQIAF VEEKKIGEML KTFPNATKYL KTLVSFGKVD PGHKEKVEQN
201: GLSIYSWEEF LQLGGKEKFE LPPKEKDDIC TIMYTSGTTG DPKGVLISNK SIVTIVSAVD EFLNNSNEQL NMDDVYISYL PLAHIFDRVI EEVFIRHGAS
301: IGFWRGDVKL LVEDIGELKP TVFCAVPRVL DRIYGGLQDK ITAGGFLKKT LFNVAYKYKQ GNMLKGNKHE EAAAMFDRLV FTKVKRGLGG RVRLILSGAA
401: PLSRHVEEYL RVVTCSHVLQ GYGLTETCAG SFVSLPNNMS MLGTVGPPVP YVEVRLESVP EMGYDALSSE TPRGEICIRG DTLFSGYYKR EDLTKEVLVD
501: GWFHTGDIGE WQSDGSMKII DRKKNIFKLS QGEYVAVENL ENIFGQTPAV DSIWVYGNSF ESSLVAVVNP NTQALERWAE SNGVTGEFAT ICEDPRAREF
601: ILGELTKMGK EKKLKGFELI RAVHLDPAPF DMERDLITPT YKKKRPQLLK HYQTIIDGMY NSMK

Best Arabidopsis Sequence Match ( AT4G23850.1 )
(BLAST)

001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG

Arabidopsis Description

LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.