Factsheet for Zm00001d005019_P004

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

peroxisome 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27640	Sorghum	peroxisome	95.18	95.18
Zm00001d052399_P007	Maize	peroxisome	94.63	94.63
Os05t0317200-01	Rice	plastid	87.05	87.05
TraesCS5D01G174000.1	Wheat	peroxisome	83.75	83.52
TraesCS5B01G166400.1	Wheat	golgi	83.75	83.52
TraesCS5A01G169600.1	Wheat	golgi	83.61	83.38
HORVU5Hr1G052100.13	Barley	peroxisome	83.61	82.58
VIT_12s0057g01270.t01	Wine grape	peroxisome	68.32	68.98
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	68.87	68.97
CDY15082	Canola	peroxisome	67.49	68.44
Bra013210.1-P	Field mustard	peroxisome	67.63	68.1
CDY66248	Canola	peroxisome	67.49	67.96
KRG89997	Soybean	endoplasmic reticulum	63.09	67.95
Solyc07g045290.2.1	Tomato	plastid	67.91	67.91
KRH17725	Soybean	peroxisome	67.77	67.86
PGSC0003DMT400044860	Potato	peroxisome	67.77	67.77
PGSC0003DMT400000868	Potato	peroxisome	67.49	67.03
AT2G04350.1	Thale cress	peroxisome	66.12	66.67
Solyc12g009040.1.1	Tomato	plastid	65.15	65.88
Zm00001d023538_P002	Maize	plastid	60.06	62.46
Zm00001d053009_P009	Maize	plastid	59.5	61.89
TraesCS3B01G570800.1	Wheat	peroxisome	17.22	60.98
Zm00001d053127_P005	Maize	mitochondrion	30.44	33.28
Zm00001d044016_P001	Maize	mitochondrion	29.48	32.67
Zm00001d043851_P001	Maize	mitochondrion	29.2	31.93
Zm00001d023238_P002	Maize	plasma membrane	30.03	31.55
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	30.17	31.47
Zm00001d045295_P001	Maize	extracellular	28.65	30.81
Zm00001d010943_P001	Maize	peroxisome	5.92	30.5
Zm00001d024723_P001	Maize	peroxisome	27.82	30.15
Zm00001d034832_P006	Maize	plastid	21.63	19.67

Protein Annotations

EntrezGene:100285568	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:50.6.2	UniProt:A0A1D6EIR5	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	ProteinID:ONM19996.1	ProteinID:ONM19997.1	ProteinID:ONM20000.1	ProteinID:ONM20003.1
ProteinID:ONM20006.1	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF30	SUPFAM:SSF56801
TMHMM:TMhelix	UniParc:UPI0001B325F2	EnsemblPlantsGene:Zm00001d005019	EnsemblPlants:Zm00001d005019_P004	EnsemblPlants:Zm00001d005019_T004	SEG:seg

Description

Acyl-CoA synthetase long-chain family member 3

Coordinates

chr2:-:154112079..154118952

Molecular Weight (calculated)

79915.4 Da

IEP (calculated)

7.476

GRAVY (calculated)

-0.098

Length

726 amino acids

Sequence
(BLAST)

001: MGEVSDDNSN LSFLKRIATS DVPLLKEYGV NGVVVALLLA VVTPVLLSMM FGKKTKQRAV RANVGGEEGF AMRNSRFSSL VEVPWEGATT MSALFEMASK
101: KYSRRRCLGT RKLIKREFVE SSDGRKFEKL HLGEYEWDTY AEAFNRACNF ASGLVKMGHD LDSHAAIFSD TRAEWIIAAQ GCFRQNLTVV TIYASLGEDA
201: LVHSLNETQV STLICDSKQL KKIPAISSKL QSLRHIIYIE DEPVEAETLN QVKHLTTLSF TEVEELGKTS SVDARLPSSS DTAVIMYTSG STGLPKGVMI
301: THGNMVATTA AVMTIVPKLG MNDVYLAYLP LAHVFELAGE TVMLASGTAI GYGSTLTMTD TSNKIKKGTK GDVSVLNPTL IISVPAILDR IRDAVFKKVG
401: EKGGLTKKLF DFAYKRNLAS IEGSWFGSWA PERMIWDTII YKPIRAMLGG RVRFVLCGGA PLSGDTQRFM NICLGVPVGQ GYGLTETCAG AAFTEWDDTS
501: VGRVGPPLPC CYVKLVSWEE GGYKISDYPM PRGEVVVGGH SITKGYFSNE AKTNEVYKVD ERGIRWFYTG DIGQFHPDGC LEIIDRKKDI VKLQHGEYVS
601: LGKVESALAT SSYVESIMVY ADPFHNYCVA LVVPVRQALE KWAQNSGINC EGFEELCQNG QAVKEVQQSL SKAAKAARLE RFEVPAKIEL LPEPWTPESG
701: LVTAALKLKR EQIKAKFKDD LDKLYH

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.