Factsheet for Zm00001d053009_P009

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
peroxisome 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	95.99	96.13
Os11t0169800-01	Rice	plastid	47.13	90.63
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	85.39	85.51
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	85.24	85.37
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	85.1	85.22
TraesCS4A01G207000.1	Wheat	golgi	84.96	84.71
Zm00001d023538_P002	Maize	plastid	81.23	81.23
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	76.36	76.47
Solyc11g018580.1.1	Tomato	plastid	66.48	76.07
GSMUA_Achr1P13190_001	Banana	vacuole	69.77	75.86
GSMUA_Achr11P...	Banana	endoplasmic reticulum	75.5	75.61
PGSC0003DMT400002337	Potato	mitochondrion	74.36	74.57
VIT_18s0001g02810.t01	Wine grape	vacuole	73.93	74.03
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	58.88	72.49
AT1G77590.1	Thale cress	peroxisome, plastid	70.2	70.91
KRH18736	Soybean	peroxisome, plastid	70.49	70.69
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	70.06	70.56
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	70.06	70.56
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	69.91	70.42
KRH53234	Soybean	mitochondrion	69.63	70.03
KRH16338	Soybean	plastid, vacuole	61.46	66.31
Zm00001d005019_P004	Maize	plasma membrane	61.89	59.5
Zm00001d052399_P007	Maize	peroxisome	61.46	59.09
Zm00001d043851_P001	Maize	mitochondrion	31.66	33.28
Zm00001d044016_P001	Maize	mitochondrion	31.09	33.13
Zm00001d024723_P001	Maize	peroxisome	30.37	31.64
Zm00001d045295_P001	Maize	extracellular	30.52	31.56
Zm00001d053127_P005	Maize	mitochondrion	29.66	31.17
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	29.51	29.6
Zm00001d023238_P002	Maize	plasma membrane	29.08	29.38
Zm00001d010943_P001	Maize	peroxisome	5.59	27.66
Zm00001d034832_P006	Maize	plastid	21.49	18.8

Protein Annotations

EnsemblPlants:Zm00001d053009_P009	EnsemblPlants:Zm00001d053009_T009	EnsemblPlantsGene:Zm00001d053009	EntrezGene:103654554	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272
PANTHER:PTHR43272:SF29	PFAM:PF00501	ProteinID:AQK58544.1	ProteinID:AQK58545.1	ScanProsite:PS00455	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF56801	UniParc:UPI0004DE871F	UniProt:A0A1D6QLG5	MapMan:50.6.2	:

Description

Long chain acyl-CoA synthetase 9 chloroplastic

Coordinates

chr4:+:208861993..208866868

Molecular Weight (calculated)

76701.1 Da

IEP (calculated)

8.580

GRAVY (calculated)

-0.034

Length

698 amino acids

Sequence
(BLAST)

001: MNPYFLGFIL PFVASLLLTK RKSEKKRGVP VNVGGEPGCA IRNHRFERPV KTRWEGISTL AELFEQSCKQ FASTPLFGTR KLIAREMVVA ADGRSFEKLH
101: LGNYEWRSYA DAFKTVCNFA SGLLRIGHLK DERVAIFADT RAEWQIALQA CFRQNIAVVT IYASLGEGAL CHSLNETEVT TVVCGRKEFK KLIDISGQLD
201: TVKHVIYIDE EGISVEVSLA ENCTSWTVKS FEEVESIGLQ RPVEANLPLP SDTAVIMYTS GSTGMPKGVM MSHQNVLAVV SAVMTIVPGL GKKDVYLAYL
301: PLAHILELAA EAIITGVGAS IGYGSPLTLT DTSNKIKKGT QGDASVLKPT LMTAVPAILD RVRDGVRKNV DAKGGLAKRL FDIAYSRRLA AVNGSWLGAW
401: GLEKLLWDML VFRKVRAILG GRIRFILAGG APLSGETQRF INICLGAPIS QGYGLTETCA GGTFSEYDET SVGRVGPPLP CSYIKLIDWA EGGYLTTDSP
501: MPRGEIVIGG PNVTKGYFKN EAKTNEVYKV DERGMRWFYS GDIGRLHPDG CLEIIDRKKD IVKLQHGEYV SLGKVEATLS VCSYVDQIMI HADPFHSYCV
601: ALVVTAQSEL KSWASKQGMT YSDFSDLCHK QGTVKEVLQS LVKAGKQARL EKFEIPAKIK LIPEPWTPES GLVTAALKLK REVIKKAYEM DLAQLYSQ

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.