Factsheet for Zm00001d024723_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21217	Sorghum	peroxisome	94.63	94.63
TraesCS1D01G077600.1	Wheat	golgi	85.07	85.07
TraesCS1B01G093600.1	Wheat	peroxisome	85.07	85.07
TraesCS1A01G075000.1	Wheat	golgi	84.93	84.93
Os05t0132100-02	Rice	plasma membrane	82.84	82.96
Zm00001d010943_P001	Maize	peroxisome	16.27	77.31
HORVU1Hr1G016200.16	Barley	peroxisome	84.78	72.82
GSMUA_Achr8P10780_001	Banana	peroxisome	70.0	70.63
VIT_07s0005g01790.t01	Wine grape	peroxisome	64.18	64.95
KRH69184	Soybean	peroxisome	63.28	64.24
KRG96554	Soybean	peroxisome	63.43	64.2
KRH68292	Soybean	endoplasmic reticulum	63.43	64.2
KRH31765	Soybean	peroxisome	62.84	63.79
PGSC0003DMT400023374	Potato	peroxisome	62.39	63.24
CDY69216	Canola	peroxisome	38.81	63.11
CDY51419	Canola	peroxisome	61.19	62.12
Bra021392.1-P	Field mustard	peroxisome	61.19	62.12
AT2G47240.2	Thale cress	peroxisome	60.9	61.82
CDY27501	Canola	peroxisome	60.45	61.36
CDY37793	Canola	peroxisome	39.25	61.02
CDX80093	Canola	peroxisome	39.25	61.02
CDY68722	Canola	peroxisome	25.67	60.56
CDX80092	Canola	mitochondrion, peroxisome	26.42	60.41
KRH66241	Soybean	peroxisome	30.6	58.24
Bra004467.1-P	Field mustard	peroxisome	60.45	58.11
CDY71490	Canola	extracellular, peroxisome	13.13	57.14
CDY72011	Canola	peroxisome	17.46	55.45
CDX95713	Canola	peroxisome	55.22	54.01
Zm00001d045295_P001	Maize	extracellular	49.7	49.33
Zm00001d044016_P001	Maize	mitochondrion	47.91	49.01
Zm00001d043851_P001	Maize	mitochondrion	48.21	48.64
Zm00001d053127_P005	Maize	mitochondrion	47.91	48.34
Zm00001d023238_P002	Maize	plasma membrane	36.57	35.46
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	36.42	35.06
Zm00001d023538_P002	Maize	plastid	31.79	30.52
Zm00001d053009_P009	Maize	plastid	31.64	30.37
Zm00001d005019_P004	Maize	plasma membrane	30.15	27.82
Zm00001d052399_P007	Maize	peroxisome	30.15	27.82
Zm00001d034832_P006	Maize	plastid	24.18	20.3

Protein Annotations

EntrezGene:100279270	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:AQK41927.1
ProteinID:AQK41928.1	UniProt:B7ZX64	EMBL:BT053906	EMBL:BT053935	EMBL:BT066429	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	PFAM:PF00501	ScanProsite:PS00455
PANTHER:PTHR43272	PANTHER:PTHR43272:SF6	SUPFAM:SSF56801	UniParc:UPI00019170D9	EnsemblPlantsGene:Zm00001d024723	EnsemblPlants:Zm00001d024723_P001
EnsemblPlants:Zm00001d024723_T001	SEG:seg	:	:	:	:

Description

Long chain acyl-CoA synthetase 1

Coordinates

chr10:-:85128123..85133094

Molecular Weight (calculated)

75035.7 Da

IEP (calculated)

7.675

GRAVY (calculated)

-0.213

Length

670 amino acids

Sequence
(BLAST)

001: MEANPKNTFT IKVEDGKPGK DGRLAVGPVF RSVLAKDGFP QLEPDMKTSW DVFRVAAVKY ADNRMLGWRP FKDGVPGPYL WKSYKEIYDE VLQAGSALQK
101: LGVQPGSRVG IYGANCPQWI VAMQACNGYS LVCVPLYDTL GAGAVDYIID HAEIDVVFIQ DKKIKEILSP NCKSAKRLKA LVAFTSATTE QNKEADQIGI
201: KMYAWDDFLK VGKDNPRQPC PPQASDICTV MYTSGTSGQP KGVMLTHESH AMYVKGVDLF MDQFDDKMTT DDVFLSFLPL AHILDRMIEE YFFHKGASIG
301: YYHGDLNALR DDIVELKPTL LVGVPRVYER IYEGILKAIA ELRPLRRVIF NALYNRKLAS MKAGYSHKTA SPFADMLAFR KVKARLGGRL RLLISGGAPL
401: SNEIEEFMRV TTCAYFIQGY GLTETLGPST VCYIDDMALV GSAGVPATYT EIRLEEVPEM GYNPLGVPSR GEICIRGKSL FAGYYKSPEL TNEAIVDGWF
501: HTGDIGEMTP DGILKVIDRK KNIFKLSQGE YVAVEYLEKV YGFPPLVEDI WVYGDSFRSS LVAVVNPHQE NTMKWAESNG YKGSFDEICK LEGLKEYILK
601: ELAAVAQKNK LRGFEYIKGV VLDPVPFDIE RDLVTATMKK KRKNMLNYYQ SEIDTIYKKL EAQKSAARAK

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.