Factsheet for VIT_07s0005g01790.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96554	Soybean	peroxisome	75.68	75.68
KRH69184	Soybean	peroxisome	75.38	75.61
KRH31765	Soybean	peroxisome	75.23	75.45
KRH68292	Soybean	endoplasmic reticulum	75.08	75.08
PGSC0003DMT400023374	Potato	peroxisome	72.81	72.92
GSMUA_Achr8P10780_001	Banana	peroxisome	69.79	69.58
KRH66241	Soybean	peroxisome	35.95	67.61
AT2G47240.2	Thale cress	peroxisome	66.47	66.67
TraesCS1B01G093600.1	Wheat	peroxisome	67.22	66.42
CDY72011	Canola	peroxisome	21.15	66.35
TraesCS1A01G075000.1	Wheat	golgi	67.07	66.27
TraesCS1D01G077600.1	Wheat	golgi	66.92	66.12
CDY51419	Canola	peroxisome	65.71	65.91
Bra021392.1-P	Field mustard	peroxisome	65.71	65.91
CDY27501	Canola	peroxisome	64.95	65.15
Os05t0132100-02	Rice	plasma membrane	65.56	64.87
CDY69216	Canola	peroxisome	40.03	64.32
KXG21217	Sorghum	peroxisome	64.95	64.18
Zm00001d024723_P001	Maize	peroxisome	64.95	64.18
Bra004467.1-P	Field mustard	peroxisome	65.71	62.41
CDY71490	Canola	extracellular, peroxisome	14.5	62.34
CDY37793	Canola	peroxisome	40.48	62.18
CDX80093	Canola	peroxisome	40.48	62.18
CDY68722	Canola	peroxisome	26.28	61.27
CDX80092	Canola	mitochondrion, peroxisome	26.59	60.07
HORVU1Hr1G016200.16	Barley	peroxisome	66.92	56.79
CDX95713	Canola	peroxisome	58.76	56.79
Zm00001d010943_P001	Maize	peroxisome	11.78	55.32
VIT_02s0025g01410.t01	Wine grape	peroxisome	48.04	48.04
VIT_03s0063g01880.t01	Wine grape	peroxisome	47.28	47.5
VIT_14s0128g00720.t01	Wine grape	peroxisome	35.5	37.12
VIT_05s0020g03080.t01	Wine grape	peroxisome	38.82	36.87
VIT_18s0001g02810.t01	Wine grape	vacuole	31.87	30.27
VIT_12s0057g01270.t01	Wine grape	peroxisome	30.51	28.09
VIT_08s0032g00050.t01	Wine grape	plastid	23.72	21.51

Protein Annotations

EntrezGene:100248587	wikigene:100248587	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
ProteinID:CBI36978	ProteinID:CBI36978.3	UniProt:D7U2L2	EMBL:FN596502	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	EntrezGene:LOC100248587	wikigene:LOC100248587	PFAM:PF00501	ScanProsite:PS00455
PANTHER:PTHR43272	PANTHER:PTHR43272:SF6	SUPFAM:SSF56801	UniParc:UPI0001983988	ArrayExpress:VIT_07s0005g01790	EnsemblPlantsGene:VIT_07s0005g01790
EnsemblPlants:VIT_07s0005g01790.t01	unigene:Vvi.22975	RefSeq:XP_002278345	RefSeq:XP_002278345.1	RefSeq:XP_010652282.1	RefSeq:XP_019076568.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:4265494..4272065

Molecular Weight (calculated)

74379.7 Da

IEP (calculated)

6.659

GRAVY (calculated)

-0.249

Length

662 amino acids

Sequence
(BLAST)

001: MKTFAVQVEN GREGRDGKPS VGPVYRNFLA KSGFPPMDSN LNTAWDNLRI SSEKYPGNRM LGWREFVGGK LGPYKWKTYR EVYEEILHIG SALQASGAQP
101: GSRVGIYGSN CPQWIVAMEA CSAYSLICVP LYDTLGPGAV DYIIDHAEVD FVFVQDKKVK ELLNPDCRSA KRLKLMVCFT SPTEEQKDKA ADIGIKPYSW
201: DEFLHMGKEN PSEVFPPQPL DICTIMYTSG TSGDPKGVVL THENVTTIVR GVDIFMEQFE DKMTVDDVYL SFLPLAHILD RIIEEYFFHK GASVGYYHGD
301: MNALREDLME LKPTLFAGVP RVFERVHEGI KKAVQELNPI RRRIFGVLYK YKLSWMNSGY KHREASPLAD LLAFRKVKAR LGGRVRLIIS GGAPLSTEVE
401: EFLRVTSCAF LTQGYGLTET CGLTSIGFPD EMSMIGTVGA VSVYSELRLE EVPEMGYDPF GDPPRGEICV RGKTIFAGYH KNPELTLESI RDGWFHTGDI
501: GEMLPNGVLK IIDRKKNLVK LSQGEYVAVE YLEKVYGTAD IVEDIWVYGN SFKSMLVAVV VPHEENTKKW ADLNGHKGSL SELCSLNLLH SYVLSELKAA
601: AELSKLRGFE HIKGVILEAR LFEAEQDLVT PTLKKRRDKM LKHYQAKIDE LYANLGEGRH KG

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.