Factsheet for VIT_18s0001g02810.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
cytosol 1
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g018580.1.1	Tomato	plastid	69.87	79.84
PGSC0003DMT400002337	Potato	mitochondrion	79.48	79.6
Os11t0169800-01	Rice	plastid	41.32	79.34
AT1G77590.1	Thale cress	peroxisome, plastid	77.47	78.15
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	77.33	77.78
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	77.76	77.76
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	77.04	77.49
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	76.9	77.34
GSMUA_Achr11P...	Banana	endoplasmic reticulum	76.9	76.9
GSMUA_Achr1P13190_001	Banana	vacuole	70.01	76.01
KRH53234	Soybean	mitochondrion	75.61	75.94
KRH18736	Soybean	peroxisome, plastid	75.32	75.43
KXG23059	Sorghum	endoplasmic reticulum	75.32	75.21
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.89	74.89
Os12t0168700-01	Rice	vacuole	74.61	74.5
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.46	74.46
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.32	74.32
TraesCS4A01G207000.1	Wheat	golgi	74.61	74.29
TraesCS5D01G129800.1	Wheat	golgi	74.32	74.21
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	74.32	74.21
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	74.32	74.21
Zm00001d023538_P002	Maize	plastid	74.17	74.07
Zm00001d053009_P009	Maize	plastid	74.03	73.93
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	73.89	73.89
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	73.89	73.78
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	58.25	71.6
KRH16338	Soybean	plastid, vacuole	66.0	71.1
VIT_12s0057g01270.t01	Wine grape	peroxisome	63.56	61.61
VIT_07s0005g01790.t01	Wine grape	peroxisome	30.27	31.87
VIT_02s0025g01410.t01	Wine grape	peroxisome	29.27	30.82
VIT_03s0063g01880.t01	Wine grape	peroxisome	28.41	30.05
VIT_14s0128g00720.t01	Wine grape	peroxisome	27.26	30.02
VIT_05s0020g03080.t01	Wine grape	peroxisome	29.56	29.56
VIT_08s0032g00050.t01	Wine grape	plastid	23.53	22.47

Protein Annotations

EntrezGene:100265978	wikigene:100265978	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
ProteinID:CBI19023	ProteinID:CBI19023.3	UniProt:E0CR69	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824
GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	EntrezGene:LOC100265978	wikigene:LOC100265978	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272
PANTHER:PTHR43272:SF29	SUPFAM:SSF56801	SignalP:SignalP-noTM	TIGR:TC65476	UniParc:UPI00015C7937	ArrayExpress:VIT_18s0001g02810
EnsemblPlantsGene:VIT_18s0001g02810	EnsemblPlants:VIT_18s0001g02810.t01	unigene:Vvi.7778	RefSeq:XP_002285853	RefSeq:XP_002285853.1	RefSeq:XP_010664211.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:2929082..2940502

Molecular Weight (calculated)

76483.7 Da

IEP (calculated)

8.074

GRAVY (calculated)

0.009

Length

697 amino acids

Sequence
(BLAST)

001: MSAYFVGLLV PLVFTLLFRN AKSGKKRGLP VDVGGEPGYA IRNRRFTSPV KSAWEGISTL AELFEQLCKQ HRDKHLLGTR KLISRETEVT ADGRSFEKVH
101: LGDYEWLTYG KTFEVICSFA SGLAQLGHKR EERAAIFADT REEWFIALQA CFRRNITVVT IYASLGEEAL CHSLNETEVT TVICGHKELK KIIDISGQLD
201: TLKRVICMDD STLCNTSLAE GGGSWTITSF SDVEKLGREN PVDADLPLSA DIAVIMYTSG STGLPKGVMM THGNVLATVS AVMTIVPGLG KVEDVYLAYL
301: PMAHILELAA ENVVAAIGGA IGYGSPLTLT DTSSRIKRGT KGDASALVPT VMTAVPAILD RVRDGVRKKV DAKGGLAKKL FDLAYARRLS AINGSWFGAW
401: GLESLLWNFL VFRKVRAILG GRIRFLLCGG APLSSDTQRF INICLGAPIV QGYGLTESCA GGTFSEYDDT SVGRVGAPLP CSFIKLINWP EGGYLTSDKP
501: MPRGEIVIGG PNVTVGYFKN EEKTNEVYKV DERGMRWFYT GDIGQFHADG CLEIIDRRKD IVKLQHGEYL SLGKVEAALI VSPYVDNIML HANPFRNYCV
601: ALVVASQPAV EDWALKQGIA FIDFSDLCQK EETVKEVHAS LVKAAKQARL EKFEIPAKIK LLPDAWTPET GLVTAALKIK RDVIRKRFSE DLARLYT

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.