CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17725	Soybean	peroxisome	97.52	97.52
KRG89997	Soybean	endoplasmic reticulum	81.93	88.13
VIT_12s0057g01270.t01	Wine grape	peroxisome	74.07	74.69
CDY15082	Canola	peroxisome	71.59	72.49
Bra013210.1-P	Field mustard	peroxisome	72.0	72.4
CDY66248	Canola	peroxisome	71.86	72.26
Solyc07g045290.2.1	Tomato	plastid	71.17	71.07
PGSC0003DMT400044860	Potato	peroxisome	71.03	70.94
AT2G04350.1	Thale cress	peroxisome	70.07	70.56
PGSC0003DMT400000868	Potato	peroxisome	70.9	70.31
Zm00001d005019_P004	Maize	plasma membrane	68.97	68.87
Os05t0317200-01	Rice	plastid	68.83	68.73
Solyc12g009040.1.1	Tomato	plastid	68.0	68.66
KXG27640	Sorghum	peroxisome	68.69	68.59
Zm00001d052399_P007	Maize	peroxisome	68.28	68.18
TraesCS5B01G166400.1	Wheat	golgi	68.0	67.72
TraesCS5D01G174000.1	Wheat	peroxisome	67.86	67.58
HORVU5Hr1G052100.13	Barley	peroxisome	68.28	67.35
TraesCS5A01G169600.1	Wheat	golgi	67.59	67.31
KRH53234	Soybean	mitochondrion	60.69	63.4
KRH18736	Soybean	peroxisome, plastid	60.69	63.22
KRH16338	Soybean	plastid, vacuole	52.55	58.89
TraesCS3B01G570800.1	Wheat	peroxisome	14.76	52.2
KRH77642	Soybean	endoplasmic reticulum	31.31	33.83
KRH48841	Soybean	peroxisome	10.21	33.79
KRH27846	Soybean	peroxisome	30.48	33.33
KRH60037	Soybean	peroxisome	30.34	33.08
KRG89197	Soybean	peroxisome	29.24	32.12
KRH49531	Soybean	peroxisome	28.97	31.82
KRH31765	Soybean	peroxisome	28.97	31.82
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	30.34	31.61
KRG91264	Soybean	peroxisome	30.34	31.52
KRH69184	Soybean	peroxisome	28.69	31.52
KRH24533	Soybean	peroxisome	28.14	31.1
KRH29538	Soybean	peroxisome	27.72	30.64
KRG96554	Soybean	peroxisome	27.86	30.51
KRH68292	Soybean	endoplasmic reticulum	27.31	29.91
KRH41306	Soybean	peroxisome	10.21	28.91
KRH66241	Soybean	peroxisome	13.52	27.84
KRG94065	Soybean	vacuole	6.9	27.32
KRH57847	Soybean	cytosol	3.03	25.0
KRH26020	Soybean	cytosol	3.03	24.72
KRH58837	Soybean	plastid	22.62	22.37
KRH31560	Soybean	plastid	22.21	22.36
KRH13185	Soybean	cytosol	17.1	19.84

Protein Annotations

EntrezGene:100803126	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:50.6.2	EMBL:ACUP02012488	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:GLYMA_20G060100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	UniProt:K7N1D8	ProteinID:KRG89993.1	ProteinID:KRG89994.1
EnsemblPlants:KRG89995	ProteinID:KRG89995	ProteinID:KRG89995.1	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272
PANTHER:PTHR43272:SF30	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI000233DD2A	:	:

Description

hypothetical protein

Coordinates

chr20:-:18426089..18437643

Molecular Weight (calculated)

79705.1 Da

IEP (calculated)

7.254

GRAVY (calculated)

-0.077

Length

725 amino acids

Sequence
(BLAST)

001: MDDPKGSSSW LKILNISDIF GWKDHGEYGA LAAIVISILV PVLFSALFFG KKKGKIRGVP VEVGGEECFA VRNARKTELV EVPWKGAPTM AHLFEQSCNK
101: YTCNRFLGTR KLIQKELVTS SDGRKFEKLH LGDYEWETYG EVFARVSNFA SGLLKLGHNE DSRVAIFSDT RAEWLIALQG CFRQNVTVVT IYASLGEDAL
201: IHSLNETEVS TLICDSKQLK KLDAIRSRLI SLQNIIYFED DNEEDAFSGS SSGWTIASFS EVEKLGKESP VEPSLPSKNA IAVIMYTSGS TGLPKGVMIT
301: HGNIVATTAA VMTVIPNLGS KDVYLAYLPL AHVFEMAAES VMLAAGCAIG YGSPLTLTDT SNKVKKGTKG DATVLKPTLL TAVPAILDRI RDGVVKKVEQ
401: KGGLVKNLFH FAYKRRLAAV KGSWLGAWGL EKLMWDTIVF KQIRSALGGQ LRFMLCGGAP LSGDSQHFIN ICMGAPIGQG YGLTETFAGA AFSEWDDYSV
501: GRVGPPLPCC YIKLVSWEEG GYLTSDKPMP RGEIVVGGFS VTAGYFKNQE KTNEVFKVDE KGMRWFYTGD IGQFHPDGCL EIIDRKKDIV KLQHGEYISL
601: GKVEAALSSC DYVDNIMVYA DPFHNYCVAL VVASQQSLEK WAQQAGIDYQ DFPDLCNKPE TVTEVLQSIS KVAKSAKLEK TEIPAKIKLL PDPWTPESGL
701: VTAALKIKRE QLKAKFKDDL QKLYA

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.