CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26020	Soybean	cytosol	96.59	95.51
KRH48841	Soybean	peroxisome	92.05	36.99
KRG89197	Soybean	peroxisome	96.59	12.88
KRH49531	Soybean	peroxisome	89.77	11.97
KRH29538	Soybean	peroxisome	79.55	10.67
KRH24533	Soybean	peroxisome	79.55	10.67
KRH27846	Soybean	peroxisome	47.73	6.33
KRH60037	Soybean	peroxisome	46.59	6.17
KRH69184	Soybean	peroxisome	42.05	5.61
KRH77642	Soybean	endoplasmic reticulum	42.05	5.51
KRH31765	Soybean	peroxisome	40.91	5.45
KRG96554	Soybean	peroxisome	40.91	5.44
KRH68292	Soybean	endoplasmic reticulum	39.77	5.29
KRG91264	Soybean	peroxisome	39.77	5.01
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	38.64	4.89
KRH66241	Soybean	peroxisome	19.32	4.83
KRH16338	Soybean	plastid, vacuole	25.0	3.4
KRH18736	Soybean	peroxisome, plastid	26.14	3.3
KRG94065	Soybean	vacuole	6.82	3.28
KRG89997	Soybean	endoplasmic reticulum	23.86	3.12
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	25.0	3.03
KRH53234	Soybean	mitochondrion	23.86	3.03
KRH58837	Soybean	plastid	25.0	3.0
KRH31560	Soybean	plastid	23.86	2.92
KRH17725	Soybean	peroxisome	23.86	2.9
KRH13185	Soybean	cytosol	7.95	1.12
KRH41306	Soybean	peroxisome	2.27	0.78

Protein Annotations

EMBL:ACUP02003057	EnsemblPlants:KRH57847	EnsemblPlantsGene:GLYMA_05G087900	PANTHER:PTHR43272	PANTHER:PTHR43272:SF4	ProteinID:KRH57847
ProteinID:KRH57847.1	UniParc:UPI000294F7E1	UniProt:K7KNV9	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr5:+:18077186..18084554

Molecular Weight (calculated)

10445.7 Da

IEP (calculated)

9.528

GRAVY (calculated)

-0.709

Length

88 amino acids

Sequence
(BLAST)

1: MHNLTHDFKS LCDNLKARKH ILDELNSTGQ KHQLRGFELL KAIHLEPNPF DIERDLITPT FKLKRPQFLK YYKDHIDQLY KEAKGAMV

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.