Factsheet for PGSC0003DMT400044860

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g045290.2.1	Tomato	plastid	98.48	98.48
PGSC0003DMT400000868	Potato	peroxisome	82.92	82.35
VIT_12s0057g01270.t01	Wine grape	peroxisome	73.55	74.27
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	70.94	71.03
CDY66248	Canola	peroxisome	70.52	71.01
CDY15082	Canola	peroxisome	69.97	70.95
Bra013210.1-P	Field mustard	peroxisome	70.25	70.74
KRH17725	Soybean	peroxisome	70.25	70.34
KRG89997	Soybean	endoplasmic reticulum	65.15	70.18
AT2G04350.1	Thale cress	peroxisome	69.42	70.0
Os05t0317200-01	Rice	plastid	69.83	69.83
TraesCS5B01G166400.1	Wheat	golgi	69.56	69.37
TraesCS5D01G174000.1	Wheat	peroxisome	69.42	69.23
TraesCS5A01G169600.1	Wheat	golgi	69.28	69.09
HORVU5Hr1G052100.13	Barley	peroxisome	69.15	68.3
KXG27640	Sorghum	peroxisome	68.18	68.18
Zm00001d005019_P004	Maize	plasma membrane	67.77	67.77
Zm00001d052399_P007	Maize	peroxisome	67.22	67.22
PGSC0003DMT400002337	Potato	mitochondrion	59.78	62.36
TraesCS3B01G570800.1	Wheat	peroxisome	14.74	52.2
PGSC0003DMT400000613	Potato	peroxisome	30.03	33.23
PGSC0003DMT400064817	Potato	peroxisome	29.75	32.78
PGSC0003DMT400023374	Potato	peroxisome	29.2	32.07
PGSC0003DMT400063438	Potato	peroxisome	3.72	29.35
PGSC0003DMT400014954	Potato	cytosol	4.41	27.59
PGSC0003DMT400053079	Potato	cytosol	18.73	21.94

Protein Annotations

EntrezGene:102603429	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
UniProt:M1BGS9	PFAM:PF00501	EnsemblPlantsGene:PGSC0003DMG400017408	PGSC:PGSC0003DMG400017408	EnsemblPlants:PGSC0003DMT400044860	ScanProsite:PS00455
PANTHER:PTHR43272	PANTHER:PTHR43272:SF30	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0002965F94	RefSeq:XP_006357661.1
RefSeq:XP_015169001.1	RefSeq:XP_015169002.1	RefSeq:XP_015169003.1	SEG:seg	:	:

Description

Long-chain acyl-CoA synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400017408]

Coordinates

chr7:+:43287999..43297084

Molecular Weight (calculated)

79722.3 Da

IEP (calculated)

8.282

GRAVY (calculated)

-0.063

Length

726 amino acids

Sequence
(BLAST)

001: MEDSEGSNPY KSTLKRLASY DYISKNYGSS GIAGAFFIAI IIPIFLSILL MGKKKAKQRG VPVQVGGEPG LAMRNAKSAR LVEVPWEGAT TVAALFEQSC
101: KKHSSYRCLG ARKLVGRDFV TASDGRKFEK LHLGEYQWES YGQVFDRACN FASGLISLGH DVDTRAAIFA ESRAEWLIAF QGCFRQNITV VTIYASLGDD
201: ALIYSLNETQ VSTLICDAKQ LKKVASVSSS LKTIKNVIYF EDDETATDST NIDSWRVSSF SEVEKLGRNS PIQARLPIKE DIAVIMYTSG STGLPKGVMI
301: THGNIVATAA AVMTVIPKLG TSDVYLAYLP LAHVFELAAE TVMLTAGACI GYGSALTLTD TSNKVMKGTK GDATVLKPTL MAAVPAILDR VRDGVMKKVE
401: EKAGSAKKLF HIAFNRRLAA MEGSWFGAWG LEKQLWDIII FKKVRAVLGG DIRFMLCGGA PLSGDTQRFI NICMGAPIGQ GYGLTETFAG AAFSEWDDPS
501: VGRVGPPLPC CYIKLITWEE GGYRIVDKPM PRGEVVVGGC SITAGYFNNE EKTNEVYKVD ETGMRWFYTG DVGRFHPDGC IEIIDRKKDI VKLQHGEYIS
601: LGKVEAALLS SNYVESIMVY ADPFHNYCVA LVVPSRPVLE KWAQENGIPH KDFSELCDRV ESVNEIKQSL SKVAKAAKLD KFELPAKIKL IPESWTPESG
701: LVTAALKLKR EPLKARYKNE LEKLYQ

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.