Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74115 | Canola | plastid | 93.72 | 94.4 |
| Bra001177.1-P | Field mustard | plastid | 93.58 | 94.25 |
| CDY49993 | Canola | mitochondrion | 93.3 | 93.97 |
| VIT_05s0020g03080.t01 | Wine grape | peroxisome | 79.6 | 80.06 |
| KRH35544 | Soybean | endoplasmic reticulum, mitochondrion | 76.89 | 77.44 |
| KRG91264 | Soybean | peroxisome | 76.46 | 76.79 |
| EES15543 | Sorghum | peroxisome | 71.47 | 73.46 |
| AT5G27600.1 | Thale cress | peroxisome, plastid | 73.32 | 73.43 |
| TraesCS4B01G133700.3 | Wheat | peroxisome | 72.61 | 73.13 |
| TraesCS4A01G184900.2 | Wheat | peroxisome | 72.47 | 72.99 |
| TraesCS4D01G128700.3 | Wheat | mitochondrion | 72.47 | 72.99 |
| Zm00001d023238_P002 | Maize | plasma membrane | 71.75 | 72.79 |
| Os12t0143900-01 | Rice | peroxisome | 73.04 | 72.42 |
| TraesCS5B01G131800.3 | Wheat | peroxisome | 72.33 | 72.22 |
| TraesCS5A01G133200.2 | Wheat | peroxisome | 72.04 | 71.94 |
| TraesCS5D01G141300.1 | Wheat | peroxisome | 71.9 | 71.79 |
| Os11t0147000-01 | Rice | peroxisome | 72.61 | 71.79 |
| Zm00001d052485_P001 | Maize | mitochondrion, peroxisome | 70.19 | 70.69 |
| KXG27718 | Sorghum | peroxisome | 70.19 | 70.59 |
| HORVU5Hr1G040740.17 | Barley | peroxisome | 70.76 | 69.37 |
| HORVU4Hr1G025820.9 | Barley | peroxisome, plastid | 70.76 | 66.13 |
| PGSC0003DMT400063438 | Potato | peroxisome | 7.85 | 59.78 |
| KRH13185 | Soybean | cytosol | 38.66 | 43.36 |
| AT1G49430.1 | Thale cress | peroxisome | 36.95 | 38.95 |
| AT1G64400.1 | Thale cress | cytosol, peroxisome, plastid | 36.66 | 38.65 |
| AT2G47240.2 | Thale cress | peroxisome | 36.38 | 38.64 |
| AT4G23850.1 | Thale cress | peroxisome | 36.52 | 38.44 |
| AT4G11030.1 | Thale cress | peroxisome | 36.23 | 38.14 |
| AT1G77590.1 | Thale cress | peroxisome, plastid | 31.38 | 31.84 |
| AT2G04350.1 | Thale cress | peroxisome | 31.67 | 30.83 |
| AT2G47245.1 | Thale cress | endoplasmic reticulum | 5.42 | 29.23 |
| AT3G23790.1 | Thale cress | plastid | 24.25 | 23.55 |
| AT4G14070.1 | Thale cress | plastid | 23.97 | 23.11 |
Protein Annotations
| Gene3D:3.40.50.12780 | MapMan:5.7.3.1 | EntrezGene:819767 | ProteinID:AAF23219.1 | EMBL:AB030317 | ProteinID:AEE74324.1 |
| EMBL:AF503756 | InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig | ArrayExpress:AT3G05970 | EnsemblPlantsGene:AT3G05970 | RefSeq:AT3G05970 |
| TAIR:AT3G05970 | RefSeq:AT3G05970-TAIR-G | EnsemblPlants:AT3G05970.1 | TAIR:AT3G05970.1 | EMBL:AY094418 | Unigene:At.25229 |
| EMBL:BT001117 | GO:GO:0000166 | GO:GO:0001676 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004467 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005777 | GO:GO:0006629 | GO:GO:0006631 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009514 | GO:GO:0009987 | GO:GO:0010193 | GO:GO:0016020 | GO:GO:0016874 |
| GO:GO:0046861 | GO:GO:0102391 | Symbol:LACS6 | RefSeq:NP_566265.1 | PFAM:PF00501 | PO:PO:0000013 |
| PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00455 | PANTHER:PTHR43272 |
| PANTHER:PTHR43272:SF17 | UniProt:Q8LPS1 | SUPFAM:SSF56801 | UniParc:UPI00000AC13B | SEG:seg | : |
Description
LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
Coordinates
chr3:-:1786279..1791887
Molecular Weight (calculated)
76607.6 Da
IEP (calculated)
8.013
GRAVY (calculated)
-0.082
Length
701 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.