Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G133700.3 | Wheat | peroxisome | 99.28 | 99.28 |
| TraesCS4D01G128700.3 | Wheat | mitochondrion | 98.56 | 98.56 |
| HORVU4Hr1G025820.9 | Barley | peroxisome, plastid | 94.83 | 88.0 |
| TraesCS5A01G133200.2 | Wheat | peroxisome | 84.77 | 84.05 |
| GSMUA_Achr8P24080_001 | Banana | mitochondrion | 73.56 | 75.29 |
| VIT_05s0020g03080.t01 | Wine grape | peroxisome | 75.29 | 75.18 |
| Solyc01g099100.2.1 | Tomato | plastid | 74.28 | 74.28 |
| Bra001177.1-P | Field mustard | plastid | 72.7 | 72.7 |
| CDX74115 | Canola | plastid | 72.56 | 72.56 |
| AT3G05970.1 | Thale cress | plastid | 72.99 | 72.47 |
| CDY49993 | Canola | mitochondrion | 72.27 | 72.27 |
| KRG91264 | Soybean | peroxisome | 72.41 | 72.21 |
| CDY05217 | Canola | plastid | 70.98 | 71.91 |
| Bra020793.1-P | Field mustard | plastid | 64.94 | 71.86 |
| KRH35544 | Soybean | endoplasmic reticulum, mitochondrion | 71.84 | 71.84 |
| CDY27725 | Canola | plastid | 70.83 | 71.76 |
| Solyc09g075790.2.1 | Tomato | peroxisome | 64.51 | 71.5 |
| VIT_14s0128g00720.t01 | Wine grape | peroxisome | 64.22 | 70.62 |
| AT5G27600.1 | Thale cress | peroxisome, plastid | 70.55 | 70.14 |
| CDX80638 | Canola | peroxisome | 70.11 | 69.81 |
| Bra009951.1-P | Field mustard | peroxisome | 69.97 | 69.77 |
| CDX86151 | Canola | peroxisome | 69.97 | 69.67 |
| CDX92843 | Canola | peroxisome | 21.12 | 68.69 |
| Solyc09g075770.1.1 | Tomato | peroxisome | 66.95 | 66.76 |
| PGSC0003DMT400063438 | Potato | peroxisome | 7.76 | 58.7 |
| CDY65251 | Canola | peroxisome | 17.96 | 53.42 |
| KRH13185 | Soybean | cytosol | 37.21 | 41.44 |
| TraesCS5A01G148700.1 | Wheat | peroxisome | 38.07 | 39.73 |
| TraesCS3A01G237700.3 | Wheat | peroxisome | 37.5 | 38.9 |
| TraesCS7A01G115900.1 | Wheat | peroxisome | 34.91 | 38.51 |
| TraesCS5A01G411500.2 | Wheat | golgi | 36.35 | 38.1 |
| TraesCS1A01G075000.1 | Wheat | golgi | 35.92 | 37.31 |
| TraesCS4A01G207000.1 | Wheat | golgi | 30.46 | 30.29 |
| TraesCS5A01G117700.1 | Wheat | endoplasmic reticulum, vacuole | 30.03 | 29.94 |
| TraesCS5A01G169600.1 | Wheat | golgi | 29.89 | 28.57 |
| GSMUA_AchrUn_... | Banana | peroxisome | 4.6 | 25.4 |
| TraesCS4A01G336500.2 | Wheat | mitochondrion, plastid | 22.7 | 21.27 |
| TraesCS4A01G336400.4 | Wheat | plastid | 21.98 | 20.84 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G184900.2 | EnsemblPlantsGene:TraesCS4A01G184900 | Gene3D:3.40.50.12780 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | InterPro:AMP-bd_C | InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig | PANTHER:PTHR43272 | PANTHER:PTHR43272:SF17 |
| PFAM:PF00501 | PFAM:PF13193 | ScanProsite:PS00455 | SEG:seg | SUPFAM:SSF56801 | TIGR:cd05927 |
| MapMan:5.7.3.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:464549148..464568089
Molecular Weight (calculated)
76705.1 Da
IEP (calculated)
6.897
GRAVY (calculated)
-0.098
Length
696 amino acids
Sequence
(BLAST)
(BLAST)
001: MDATERRLRA VSAHLQPQAT AARRTSDSLA PNPTAGEYAH VLGYSAVLPE KLQTGKWNVY RSAHSPITLI DRFSDYPDIG TLHDNFVNAV ETFRDCRYLG
101: TRVHADGTIG DYKWMTYGEA GTSRTAIGSG LICHGIPKGA RVGLYFINRP EWTIVDNACS AYSYVSVPLY DTLGPDAVQF IVNHASLEAI FCVPQTLSTL
201: LSFITQMPCV RLIVVVGGID ENMPSSPAAA GMEIITYSML HRQGHMSPQP FRPPKPEDVA TICYTSGTTG TPKGAVLSHA NFIANVAGQD LGVKFYPSDV
301: YISYLPLAHI YERTNQIWLV HRGAAVGFYQ GDNLKLMDDL NTLKPTVFAS VPRLYNKIYA AITNAVKESG GLKERLFHAA YNAKRQAIIN GRNPSPVWDK
401: LVFNKIKARL GGRVRVMSSG ASPLSPDVME FLRICFGGDI LEGYGMTETS CVITLMDVGD ISIGHVGSPN PACEVKLVDV PEMNYTSEDQ PYPRGEICAR
501: GPIIFQGYYK DEVQTREVID EDGWLHTGDI GLWLPGGRLK IIDRKKNIFK LAQGEYIAPE KIENVYAKCK FIAQCFVYGD SFNSCLVAVV AVEPEVLKSW
601: AALEGIQYED LRQLCSDPRA RAAVLADMDS IGKEAQLRGF EFVKAVTLVA EPFTLENGLL TPTFKVKRPQ AKAYFAKEIT DMYAQLLDAE SAKPKL
101: TRVHADGTIG DYKWMTYGEA GTSRTAIGSG LICHGIPKGA RVGLYFINRP EWTIVDNACS AYSYVSVPLY DTLGPDAVQF IVNHASLEAI FCVPQTLSTL
201: LSFITQMPCV RLIVVVGGID ENMPSSPAAA GMEIITYSML HRQGHMSPQP FRPPKPEDVA TICYTSGTTG TPKGAVLSHA NFIANVAGQD LGVKFYPSDV
301: YISYLPLAHI YERTNQIWLV HRGAAVGFYQ GDNLKLMDDL NTLKPTVFAS VPRLYNKIYA AITNAVKESG GLKERLFHAA YNAKRQAIIN GRNPSPVWDK
401: LVFNKIKARL GGRVRVMSSG ASPLSPDVME FLRICFGGDI LEGYGMTETS CVITLMDVGD ISIGHVGSPN PACEVKLVDV PEMNYTSEDQ PYPRGEICAR
501: GPIIFQGYYK DEVQTREVID EDGWLHTGDI GLWLPGGRLK IIDRKKNIFK LAQGEYIAPE KIENVYAKCK FIAQCFVYGD SFNSCLVAVV AVEPEVLKSW
601: AALEGIQYED LRQLCSDPRA RAAVLADMDS IGKEAQLRGF EFVKAVTLVA EPFTLENGLL TPTFKVKRPQ AKAYFAKEIT DMYAQLLDAE SAKPKL
001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA
Arabidopsis Description
LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.