CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
mitochondrion 1
peroxisome 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15431

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	EES15431	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023238_P002	Maize	plasma membrane	94.87	93.63
TraesCS5B01G131800.3	Wheat	peroxisome	86.22	83.76
KXG27718	Sorghum	peroxisome	85.34	83.5
TraesCS5D01G141300.1	Wheat	peroxisome	85.63	83.19
TraesCS5A01G133200.2	Wheat	peroxisome	85.63	83.19
Os12t0143900-01	Rice	peroxisome	85.48	82.46
Os11t0147000-01	Rice	peroxisome	85.19	81.95
HORVU5Hr1G040740.17	Barley	peroxisome	82.84	79.02
GSMUA_Achr8P24080_001	Banana	mitochondrion	74.78	75.0
VIT_05s0020g03080.t01	Wine grape	peroxisome	75.95	74.32
Solyc01g099100.2.1	Tomato	plastid	74.63	73.13
AT3G05970.1	Thale cress	plastid	73.46	71.47
Bra001177.1-P	Field mustard	plastid	72.73	71.26
CDX74115	Canola	plastid	72.58	71.12
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	72.58	71.12
VIT_14s0128g00720.t01	Wine grape	peroxisome	65.84	70.93
CDY05217	Canola	plastid	71.41	70.89
CDY49993	Canola	mitochondrion	72.29	70.83
KRG91264	Soybean	peroxisome	72.43	70.77
CDY27725	Canola	plastid	71.26	70.74
Bra020793.1-P	Field mustard	plastid	65.1	70.59
CDX92843	Canola	peroxisome	22.14	70.56
Solyc09g075790.2.1	Tomato	peroxisome	64.66	70.22
AT5G27600.1	Thale cress	peroxisome, plastid	71.85	70.0
CDX80638	Canola	peroxisome	71.7	69.96
Bra009951.1-P	Field mustard	peroxisome	71.55	69.91
CDX86151	Canola	peroxisome	71.55	69.81
Solyc09g075770.1.1	Tomato	peroxisome	67.16	65.62
PGSC0003DMT400063438	Potato	peroxisome	8.36	61.96
CDY65251	Canola	peroxisome	18.48	53.85
KRH13185	Soybean	cytosol	37.68	41.12
KXG27302	Sorghum	cytosol	3.23	40.74
EES01192	Sorghum	peroxisome	39.0	40.61
EES01271	Sorghum	peroxisome	38.71	39.88
KXG28707	Sorghum	peroxisome	38.86	39.85
OQU75859	Sorghum	peroxisome	37.39	39.29
KXG19348	Sorghum	peroxisome	36.8	38.67
KXG21217	Sorghum	peroxisome	35.34	35.97
OQU82479	Sorghum	peroxisome	37.39	35.27
KXG27640	Sorghum	peroxisome	31.96	30.03
KXG23059	Sorghum	endoplasmic reticulum	30.5	29.8
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	30.06	29.41
GSMUA_AchrUn_...	Banana	peroxisome	4.99	26.98
KXG37146	Sorghum	plastid	23.75	21.95

Protein Annotations

EnsemblPlants:EES15543	EnsemblPlantsGene:SORBI_3008G010800	EntrezGene:8070341	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17
PFAM:PF00501	ProteinID:EES15543	ProteinID:EES15543.1	RefSeq:XP_002441705.1	ScanProsite:PS00455	SUPFAM:SSF56801
unigene:Sbi.4669	UniParc:UPI0001A8838A	UniProt:C5YQ78	MapMan:5.7.3.1	:	:

Description

hypothetical protein

Coordinates

chr8:+:892268..901825

Molecular Weight (calculated)

75287.6 Da

IEP (calculated)

6.667

GRAVY (calculated)

-0.037

Length

682 amino acids

Sequence
(BLAST)

001: MEDDAAHLQR PTPLLAVNPT AAEYVHAQGY SVVLPEKLQT GRWNVYRSAH SPLRLISRYP DTPDIGTLHD NFTYAVETFT DCRYLGTRIR TDGTIGDYKW
101: MTYGEASTSR TAVGSGLIYH GVREGACIGL YFINRPEWVI VDHACSAYSY VSVPLYDTLG PDAVQFIVNH AAVEVIFCVP QTLSILLSFI AQMPCVRLIV
201: VVGGDDANMP STPVTTGVEI ITYSKLLIQG KISPQHFRPP KPEDVATICY TSGTTGTPKG VVLSHENLIA NVAGSSLNIK FYPSDVYISY LPLAHIYERV
301: NQIAALHCGV AIGFYQGDNL KLMDDLAALR PTIFASVPRL YNRIYTAITN AVKESGGLKE KLFHTAYNVK RQAILNGKNP SPVWDKLVFN KIKARLGGRV
401: RLMSSGASPL SADVMEFLRI CFGGEVLEGY GMTETSCIIS AMDVGDRSIG HVGSPIASCE VKLVDVPEMN YTSEDQPYPR GEICVRGPIV FHGYYKDEVQ
501: TKEVIDEDGW LHTGDIGLWL PGGRLKIIDR KKNIFKLAQG EYIAPEKIEN VYAKCKFIAQ CFIYGDSLNS FLVGIVAVEP EVLKAWAASE GIQCEDLRQL
601: CADPRARAAV LADMDSVGKE AQLRGFEFAK AVRLVAEPFT VENGLLTPTF KVKRPQAKTY FAKEISDMYA ELREAEAPRS KL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.