CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15314
EES15543
EES19022
KXG27718
KXG34022

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	EES15314	AT3G01910.1	21798944
AT5G56290.1	EES19022	AT3G01910.1	21798944
AT5G56290.1	EES15543	AT5G27600.1	16256065
AT5G56290.1	KXG27718	AT5G27600.1	16256065
AT5G56290.1	KXG34022	AT5G43280.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031327_P009	Maize	plastid	95.5	94.73
Os08t0500100-02	Rice	cytosol	86.78	86.55
Zm00001d052851_P002	Maize	plastid	90.46	86.35
HORVU7Hr1G049220.10	Barley	plastid	85.69	84.09
TraesCS7A01G241500.5	Wheat	cytosol, plastid	85.42	83.82
TraesCS7B01G137000.2	Wheat	cytosol, plastid	85.29	83.69
TraesCS7D01G240500.3	Wheat	cytosol, plastid	84.06	82.38
CDY67858	Canola	cytosol	23.84	79.19
TraesCS6A01G105000.1	Wheat	plastid	74.52	77.15
CDY66435	Canola	cytosol	11.58	73.28
GSMUA_Achr7P20310_001	Banana	plastid	67.57	65.44
VIT_19s0015g01940.t01	Wine grape	plastid	64.44	64.27
Solyc10g005650.2.1	Tomato	plastid	63.76	62.9
PGSC0003DMT400029209	Potato	cytosol, plastid	63.76	62.9
KRH56371	Soybean	plastid	61.58	61.41
CDY49390	Canola	plastid	58.17	61.26
AT5G56290.1	Thale cress	plastid	60.63	61.13
Bra028938.1-P	Field mustard	plastid	60.63	60.96
CDY11941	Canola	plastid	60.63	60.96
KRH62568	Soybean	plastid	61.17	60.84
CDY36789	Canola	plastid	60.63	58.94
Bra002826.1-P	Field mustard	plastid	58.58	56.43
CDY69423	Canola	plastid	28.61	48.39
CDY66434	Canola	cytosol, nucleus, plastid	17.98	46.64
CDY20736	Canola	extracellular	3.68	42.19
Bra035613.1-P	Field mustard	extracellular, mitochondrion	5.31	33.05

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.4.1.1.1	EntrezGene:8067008	UniProt:C5YJ82	EnsemblPlants:EES15431	ProteinID:EES15431
ProteinID:EES15431.1	GO:GO:0003674	GO:GO:0005052	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005778	GO:GO:0005829
GO:GO:0006625	GO:GO:0006810	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016560	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
PFAM:PF13181	PFAM:PF13414	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR10130
PANTHER:PTHR10130:SF0	InterPro:PTS1R_family	SMART:SM00028	EnsemblPlantsGene:SORBI_3007G217000	SUPFAM:SSF48452	unigene:Sbi.3823
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001A87BA6	RefSeq:XP_002445936.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:64522176..64529519

Molecular Weight (calculated)

81307.1 Da

IEP (calculated)

4.487

GRAVY (calculated)

-0.580

Length

734 amino acids

Sequence
(BLAST)

001: MALRHLVTGQ NNCTPDGASS SNPLNALANA FLGQSSKAQS IKELPGSVSV PSTSDFSTPA PISNIPGAEN EFKQDQRPLA RGADFIRGGP ANDWIESFRP
101: PGVPQLGVEA QFRDFEQIYN NTGTTFQPPL DGPPQRVLSG VLHSFLTSGP AGVPFQPLPV PAALGLSESD KQCIRDRSCI MARHIFSDQP EEYIQAQVNT
201: LLHSLDIDNR MRGPMHGHYP ELQEYWNQSQ SSMGPAPMHN AADKWITEFD KQNNNPENWA NSFEQQYGPN GWASEFEQHQ SQMAMGPMGG ANMGNLAAME
301: QSRMLAQTLA SNNDPKFQNS KFFQFVSKMS RGELIIEDNQ VKEGSASQSS GWADEFQTQY NANANSWADQ FEHEELSHGA DKWVSEFSSQ HNQGALNENW
401: VDEFSKLNVT DEWAEEFSGG GFGESSADPW VDEFQEHMSS FKQSSGTSRG VYVFSENNPY VGHPNPMQEG QELFRKGLLS EAVLALEAEV LKNPDNAEGW
501: RLLGVTHAEN DDDQQAIAAM MRALEANPTN LEILLALGVS HTNELEQGEA LRYLSRWLQN HPKYGGLVPP QSTDSPYGPD VVRLFNEAAQ MSPEDADVHI
601: VLGVLYNLSR EYDKAIASFK TALQLKPQDY SLWNKLGATQ ANSIQSADAI LAYQQALDLK PNYVRAWANM GISYANQGLY EDSIRYYVRA VAMNPKADNA
701: WQYLRISLSN ASRADMIAAC DARNLDALQK EFPL

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.