Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g005650.2.1 | Tomato | plastid | 75.54 | 74.73 |
| PGSC0003DMT400029209 | Potato | cytosol, plastid | 75.54 | 74.73 |
| KRH56371 | Soybean | plastid | 73.78 | 73.78 |
| KRH62568 | Soybean | plastid | 73.64 | 73.44 |
| Bra028938.1-P | Field mustard | plastid | 70.38 | 70.96 |
| AT5G56290.1 | Thale cress | plastid | 70.11 | 70.88 |
| GSMUA_Achr7P20310_001 | Banana | plastid | 72.28 | 70.18 |
| Bra002826.1-P | Field mustard | plastid | 67.93 | 65.62 |
| Os08t0500100-02 | Rice | cytosol | 64.95 | 64.95 |
| EES15431 | Sorghum | plastid | 64.27 | 64.44 |
| Zm00001d031327_P009 | Maize | plastid | 64.27 | 63.92 |
| CDY69423 | Canola | plastid | 37.5 | 63.59 |
| HORVU7Hr1G049220.10 | Barley | plastid | 64.54 | 63.5 |
| TraesCS7B01G137000.2 | Wheat | cytosol, plastid | 64.54 | 63.5 |
| TraesCS7A01G241500.5 | Wheat | cytosol, plastid | 64.4 | 63.37 |
| TraesCS7D01G240500.3 | Wheat | cytosol, plastid | 63.72 | 62.62 |
| Zm00001d052851_P002 | Maize | plastid | 61.55 | 58.91 |
| TraesCS6A01G105000.1 | Wheat | plastid | 56.11 | 58.25 |
| Bra035613.1-P | Field mustard | extracellular, mitochondrion | 5.43 | 33.9 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100251495 | wikigene:100251495 | MapMan:23.4.1.1.1 | ProteinID:CBI39871 | ProteinID:CBI39871.3 |
| UniProt:D7UAV6 | EMBL:FN596747 | GO:GO:0003674 | GO:GO:0005052 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0005778 |
| GO:GO:0005829 | GO:GO:0006625 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016560 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | EntrezGene:LOC100251495 | wikigene:LOC100251495 | PFAM:PF00515 | PFAM:PF13432 | PFscan:PS50005 |
| PFscan:PS50293 | PANTHER:PTHR10130 | PANTHER:PTHR10130:SF0 | InterPro:PTS1R_family | SMART:SM00028 | SUPFAM:SSF48452 |
| TIGR:TC53257 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | UniParc:UPI0001BE54D6 |
| ArrayExpress:VIT_19s0015g01940 | EnsemblPlantsGene:VIT_19s0015g01940 | EnsemblPlants:VIT_19s0015g01940.t01 | RefSeq:XP_002266713 | RefSeq:XP_002266713.1 | RefSeq:XP_010644705.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr19:-:10785632..10830060
Molecular Weight (calculated)
81582.7 Da
IEP (calculated)
4.606
GRAVY (calculated)
-0.537
Length
736 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMRELVTGG AACAVPGSSS SSNPLGALAN ALIGSSSKTQ ERLNEIPTAI PTSSDGQFYS ETNDRLATLP GSEFDQQQFL QPNASGSEFL RGFHSAGQSD
101: LADAWNEIHH PPVPAHPELG RIHDGGVRTQ LQPTLDGTPQ RVLSSFLHTF VDSSRGGIPF RPTPLPLLGL SEGDKQCIRD RSSIMARHFF ADKSEDFINA
201: QVNALLCSLE IDSDIQAKGP PPGRFRELEE YWNESQGALG PGPHAADGWI AEFGQHRAEH GGPDAWAHSF VQQHGANGWA SEFEQEQTQI AQMRGANISN
301: LAAMEQTRML AHTLAQNNDP KFQNSKFLQF VSKMSRGELI IDDNQVKPGA SSSSGDWAGE FQQQYSGGLN WADQFVHDAG PERWVNEFTT EAKQRGSVDD
401: PWVDEFSKLH IQDWVEEFGQ QDEGAADNWA TAYDEYLNEQ EASKQQSDKS RGVYVFSDMN PYVGHPNPLK EGQELFRKGL LSEAVLALEA EVLKNPDNAE
501: GWRLLGIAHA ENDDDQQAIA SMMRAQEVEP TNLEVLLALG VSHTNELEQA AALKYLYSWL RHHPKYGTLA PMEQSDSLYY ADVVRLFNDA AQMSPEDADV
601: HIVLGVLYNL SREYDKAIAS FQTALKLKPR DYSLWNKLGA TQANSVQSAD AILAYQQALD LKPNYVRAWA NMGISYANQG MHEDSIRYYV RALAMNPKAD
701: NAWQYLRISL SCASRNDMME ACDARNLDIL QKEFPL
101: LADAWNEIHH PPVPAHPELG RIHDGGVRTQ LQPTLDGTPQ RVLSSFLHTF VDSSRGGIPF RPTPLPLLGL SEGDKQCIRD RSSIMARHFF ADKSEDFINA
201: QVNALLCSLE IDSDIQAKGP PPGRFRELEE YWNESQGALG PGPHAADGWI AEFGQHRAEH GGPDAWAHSF VQQHGANGWA SEFEQEQTQI AQMRGANISN
301: LAAMEQTRML AHTLAQNNDP KFQNSKFLQF VSKMSRGELI IDDNQVKPGA SSSSGDWAGE FQQQYSGGLN WADQFVHDAG PERWVNEFTT EAKQRGSVDD
401: PWVDEFSKLH IQDWVEEFGQ QDEGAADNWA TAYDEYLNEQ EASKQQSDKS RGVYVFSDMN PYVGHPNPLK EGQELFRKGL LSEAVLALEA EVLKNPDNAE
501: GWRLLGIAHA ENDDDQQAIA SMMRAQEVEP TNLEVLLALG VSHTNELEQA AALKYLYSWL RHHPKYGTLA PMEQSDSLYY ADVVRLFNDA AQMSPEDADV
601: HIVLGVLYNL SREYDKAIAS FQTALKLKPR DYSLWNKLGA TQANSVQSAD AILAYQQALD LKPNYVRAWA NMGISYANQG MHEDSIRYYV RALAMNPKAD
701: NAWQYLRISL SCASRNDMME ACDARNLDIL QKEFPL
001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL
Arabidopsis Description
PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.