CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94262
KRH03036
KRH57695
KRH66641
KRH72318

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	KRG94262	AT3G01910.1	21798944
AT5G56290.1	KRH57695	AT3G01910.1	21798944
AT5G56290.1	KRH66641	AT5G43280.1	24879895
AT5G56290.1	KRH03036	AT5G57910.1	21798944
AT5G56290.1	KRH72318	AT5G57910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62568	Soybean	plastid	97.15	96.88
VIT_19s0015g01940.t01	Wine grape	plastid	73.78	73.78
PGSC0003DMT400029209	Potato	cytosol, plastid	71.6	70.83
Solyc10g005650.2.1	Tomato	plastid	70.92	70.16
AT5G56290.1	Thale cress	plastid	69.16	69.92
Bra028938.1-P	Field mustard	plastid	68.21	68.77
GSMUA_Achr7P20310_001	Banana	plastid	68.89	66.89
Bra002826.1-P	Field mustard	plastid	64.95	62.73
EES15431	Sorghum	plastid	61.41	61.58
Os08t0500100-02	Rice	cytosol	61.41	61.41
Zm00001d031327_P009	Maize	plastid	61.14	60.81
HORVU7Hr1G049220.10	Barley	plastid	60.6	59.63
TraesCS7A01G241500.5	Wheat	cytosol, plastid	60.6	59.63
TraesCS7B01G137000.2	Wheat	cytosol, plastid	60.46	59.49
TraesCS7D01G240500.3	Wheat	cytosol, plastid	60.33	59.28
CDY69423	Canola	plastid	34.1	57.83
Zm00001d052851_P002	Maize	plastid	58.83	56.31
TraesCS6A01G105000.1	Wheat	plastid	51.63	53.6
Bra035613.1-P	Field mustard	extracellular, mitochondrion	5.43	33.9

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100527272	MapMan:23.4.1.1.1	EMBL:ACUP02004114	EnsemblPlantsGene:GLYMA_06G320100	GO:GO:0003674
GO:GO:0005052	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0005778	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016560	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:K7KYM0	ProteinID:KRH56370.1	EnsemblPlants:KRH56371	ProteinID:KRH56371	ProteinID:KRH56371.1
PFAM:PF00515	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR10130	PANTHER:PTHR10130:SF0
InterPro:PTS1R_family	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1
InterPro:TPR_repeat	UniParc:UPI000294EDB6	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:50873844..50888597

Molecular Weight (calculated)

82197.4 Da

IEP (calculated)

4.476

GRAVY (calculated)

-0.579

Length

736 amino acids

Sequence
(BLAST)

001: MAMRDLVSGA AACGDSSSSS SNPLASLANA LIGSSSKTQE RLKEIPTSTP TDPASQFYST ALPANQLPGS EFDKPLLNLN SQASEFLHRF RGSTGLEETW
101: DEIQRDGAAA QMRQLPPGIQ QPPLDGTPQR VLSNILHSFL DSSRGGVPFH PAPLPMLGLS EGDKQCIRDR SSIMARHLFV DKSEEFIDAQ VNALLCSLDI
201: DSSVRGKGPM PERFRELEDY WNESQGNLRL GPPAPDGWIS EFSQQREKYD NPDSWANSFE QQYGANGWVS EFEHSQLSSV DQMRGMNMSN FAAREQTRML
301: ANTLAQNGDP KFQNSKFLQF VSKMSRGELI IDDNQVKENA LPASGDWATE YNQQYNHGHA WAGEFLNDKV YHGPDQWANE FTSEGRQHDA VDDQWVNEFS
401: KLKVNDWADE FGQQFGEGAL GDSTSDSWAQ AYDEFLNEQV AAKQQLDSSR GVYVFSDLNP YVGHPNPLKE GQDLFRKGLL SEAVLALEAE VLKNPENAEG
501: WRLLGIAHAE NDDDQQAIAA MMRAQEANPT NLEVLLALGV SHTNELEQTA ALKYLYGWLR HHPKYGTLAP PEMADSLYYA DVARLFNEAA ELSPDDADVH
601: IVLGVMYNLS REYDKAIASF ERALKLKPQD YSLWNKLGAT QANSVQSADA IMAYQQALDL KPNYVRAWAN MGISYANQGM YDESIRYYVR ALAMNPKAEN
701: AWQYLRISLS CASRNDMLEA CDSRNLDLLQ KEFPLQ

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.