Factsheet for VIT_11s0037g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05610.t01
VIT_16s0098g00600.t01
VIT_18s0122g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57910.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT5G57910.1	VIT_04s0008g05610.t01	AT4G32190.1	21798944
AT5G57910.1	VIT_18s0122g00110.t01	AT5G25070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03036	Soybean	nucleus	50.0	45.91
KRH72318	Soybean	cytosol	48.31	44.02
Bra011204.1-P	Field mustard	nucleus	35.17	40.1
CDY28197	Canola	nucleus	35.17	40.1
Bra002685.1-P	Field mustard	nucleus	32.63	39.69
CDX68674	Canola	nucleus	34.75	39.42
Bra024058.1-P	Field mustard	nucleus	33.9	39.41
CDY57462	Canola	nucleus	33.05	38.81
CDY51271	Canola	nucleus	31.78	38.66
CDY39225	Canola	nucleus	32.63	38.5
CDY32739	Canola	nucleus	30.51	37.31
AT5G57910.1	Thale cress	nucleus	32.63	37.2
CDY02778	Canola	nucleus	30.51	36.92
Solyc12g009970.1.1	Tomato	nucleus	46.19	36.82
CDY11841	Canola	nucleus	33.05	36.62
Bra020404.1-P	Field mustard	nucleus	31.36	36.27
PGSC0003DMT400020258	Potato	nucleus	45.34	36.27
Bra006793.1-P	Field mustard	mitochondrion, nucleus	25.0	35.98
CDX88648	Canola	nucleus	32.2	35.85
PGSC0003DMT400028944	Potato	cytosol	45.34	35.67
Solyc07g005690.2.1	Tomato	cytosol	44.07	34.9
Bra041159.1-P	Field mustard	cytosol	18.64	33.59
AT4G30630.1	Thale cress	nucleus	30.51	30.38

Protein Annotations

ArrayExpress:VIT_11s0037g00390	EMBL:FN596499	EnsemblPlants:VIT_11s0037g00390.t01	EnsemblPlantsGene:VIT_11s0037g00390	EntrezGene:100267212	EntrezGene:LOC100267212
ncoils:Coil	PANTHER:PTHR34807	PANTHER:PTHR34807:SF3	ProteinID:CBI36541	ProteinID:CBI36541.3	RefSeq:XP_002277707
RefSeq:XP_002277707.1	SEG:seg	unigene:Vvi.4139	UniParc:UPI00015C9A2A	UniProt:D7U1C5	wikigene:100267212
wikigene:LOC100267212	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr11:+:8189251..8191684

Molecular Weight (calculated)

26839.4 Da

IEP (calculated)

10.665

GRAVY (calculated)

-0.968

Length

236 amino acids

Sequence
(BLAST)

001: MSKKMKRMVM ESSPHAVYED AKSRFKHQSL LQDFHELQKE TEAMKKKLLS VNQNKLTLLA EVRFLRRRYK YLLKNMAPKT PPEPELKQPQ NSATQLKNIT
101: RDKNHSGKQA AAMRNPAPVF GGNMKERIHK GKVAALPNPD PGYELNQKTR GYSGKEAALR NPVPVFDLNK ISREEEEVQV NVESAGVEEQ KKSVIRGGND
201: DQHSDMKLSV CRNIGNGPNR AGKRKISWQD QVALRV

Best Arabidopsis Sequence Match ( AT5G57910.1 )
(BLAST)

001: MNPTHGDFTP LNSNHFEDPK VRFRHHSLMQ DYGELHMETE AMRKRLQAVR ERKATLMAEV RFLRRRYRHL RQDQPQEIKK VRRSNGGKKI RVEVSPSNKS
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV

Arabidopsis Description

At5g57910 [Source:UniProtKB/TrEMBL;Acc:Q8GW24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.