Factsheet for VIT_04s0008g05610.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s1522g00010.t01
VIT_01s0011g03610.t01
VIT_04s0008g04950.t01
VIT_04s0023g02130.t01
VIT_05s0020g03470.t01
VIT_06s0004g08050.t01
VIT_08s0058g00530.t01
VIT_11s0052g01840.t01
VIT_13s0084g00660.t01
VIT_14s0108g00940.t01
VIT_15s0021g02140.t01
VIT_17s0000g07490.t01
VIT_18s0001g05810.t01
VIT_19s0014g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32190.1	VIT_06s0004g08050.t01	AT1G15720.1	21798944
AT4G32190.1	VIT_17s0000g07490.t01	AT1G19010.1	21798944
AT4G32190.1	VIT_18s0001g05810.t01	AT1G22840.1	21798944
AT4G32190.1	VIT_01s0011g03610.t01	AT1G25420.1	21798944
AT4G32190.1	VIT_19s0014g00220.t01	AT1G53510.1	21798944
AT4G32190.1	VIT_11s0052g01840.t01	AT2G18730.1	21798944
AT4G32190.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT4G32190.1	VIT_14s0108g00940.t01	AT3G01180.1	21798944
AT4G32190.1	VIT_08s0058g00530.t01	AT3G08780.1	21798944
AT4G32190.1	VIT_05s0020g03470.t01	AT3G22440.1	21798944
AT4G32190.1	VIT_05s0020g03470.t01	AT4G14900.1	21798944
AT4G32190.1	VIT_04s0008g04950.t01	AT4G32570.1	21798944
AT4G32190.1	VIT_13s0084g00660.t01	AT5G06960.1	21798944
AT4G32190.1	VIT_00s1522g00010.t01	AT5G65495.1	21798944
AT4G32190.1	VIT_04s0023g02130.t01	AT5G66460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010993	Potato	plastid	55.3	55.58
KRH15859	Soybean	endoplasmic reticulum, vacuole	51.42	55.43
Solyc08g022030.2.1	Tomato	nucleus	55.04	55.32
CDX81488	Canola	cytosol, nucleus, plastid	10.72	54.25
KRH05183	Soybean	plastid	53.1	53.8
Bra011328.1-P	Field mustard	plastid	50.65	52.06
CDX75227	Canola	plastid	50.26	51.66
CDX68825	Canola	plastid	50.13	51.53
AT4G32190.1	Thale cress	plastid	50.26	49.68
CDY61791	Canola	nucleus	9.69	48.39
CDX81487	Canola	cytosol	13.82	47.98
CDX81489	Canola	nucleus	9.3	45.57
CDY61790	Canola	endoplasmic reticulum, extracellular	19.77	40.48
TraesCS6A01G180500.1	Wheat	plastid	35.27	35.32
HORVU6Hr1G036020.1	Barley	plastid	34.75	34.75
TraesCS6D01G164600.1	Wheat	plastid	34.5	34.54
Os02t0186400-01	Rice	plastid	33.59	34.08
Zm00001d053726_P001	Maize	plastid	33.72	33.85
EES06399	Sorghum	plastid	33.85	33.85
CDY02356	Canola	cytosol	6.2	29.09
Bra023156.1-P	Field mustard	cytosol	6.2	29.09
GSMUA_AchrUn_...	Banana	mitochondrion	6.33	21.59
Bra030239.1-P	Field mustard	nucleus	9.69	13.91
CDY35289	Canola	nucleus	6.59	13.64
CDX95298	Canola	nucleus	7.88	6.14

Protein Annotations

EntrezGene:100262916	wikigene:100262916	MapMan:3.2.1.3	ProteinID:CBI21057	ProteinID:CBI21057.3	ncoils:Coil
UniProt:D7SUV8	EMBL:FN595231	GO:GO:0000003	GO:GO:0000795	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049	GO:GO:0007131
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100262916	wikigene:LOC100262916
PANTHER:PTHR23160	PANTHER:PTHR23160:SF11	UniParc:UPI00015C856D	ArrayExpress:VIT_04s0008g05610	EnsemblPlantsGene:VIT_04s0008g05610	EnsemblPlants:VIT_04s0008g05610.t01
unigene:Vvi.5920	RefSeq:XP_002282750	RefSeq:XP_002282750.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:5088370..5092097

Molecular Weight (calculated)

89266.0 Da

IEP (calculated)

5.140

GRAVY (calculated)

-0.719

Length

774 amino acids

Sequence
(BLAST)

001: MAFAAVFHVP PTSSHHYSQL CSLGLNRKQK RLAVMTTSKR KGHSRRIVKS VLNNRKSSIN DNGSTEPARV LLERLFAQTQ KLEEHMSRDP GLPLDIQLGL
101: NLETLESDLQ AALVALKKKE EDLQDAAGMV LMEHTELNRA KEELKRHAEE IAVACSKHEK LEEELKQANL NLASRARQIE DLKLQLKDRD QEIFAARSAL
201: SSKQDEMDKM RNELMKKTEE AAKKESELQS MAKLLDEANE VVKKQEIELQ ELQKSIQEKE EELEESMMLR KLEEKKLKVA EANLEKKTMD WLLAKEELKK
301: LAEDAAKHMG ESNKTMKEFR RAKRLLHDVR SELVSSQKSL ASSRQKMQEQ EKLLEKQLAE LEEQKTSINH YMTSLKDAQI EVESERVKLR VAESRNKELE
401: WDLSVKKELM EELQEELRKE KSSLQQVIQE TSFLQKELDQ KTTEFGELHN LLQVKESELV EARLEIQHLK SEQVSLQLIL KERDLELFNA QKKLEEVNQE
501: VSELKMLMNN REDQLMQATT LLKEKEEHLL IMQHELNDTK LKFSEAESVV ERIVDLTNKL VICTKDEECT ATSPFDDMGQ NLLHQLFEKP TDDFKRQEKR
601: LETELELTRE SLRTKELEVL AAQRALTIKD EELKIALERL DAREKELRRM KEETMEDANH LKNLYALAQE RIGEKSVGDL AIEKLQLEAA QLEVEAATSA
701: LHKLAEMSCE LLHNVSLSVD SETDTAIFLP NGFDPWLSMH ENNEHFTKVK TEVARLSAIT DQLVQEAGVV GAAN

Best Arabidopsis Sequence Match ( AT4G32190.1 )
(BLAST)

001: MGFSQAIRLN LASFSSPSPC DYCLTRVVNH KQKSLVAFPS ITRRKRHLLL SVQSVLHNTR PNINDNGSAE SANVLFDKLF ARTHRLERQT NQHSVYPDDD
101: DLPYSNLGVL ESDLEAALVA LLKREEDLHD AERKLLSDKN KLNRAKEELE KREKTISEAS LKHESLQEEL KRANVELASQ AREIEELKHK LRERDEERAA
201: LQSSLTLKEE ELEKMRQEIA NRSKEVSMAI SEFESKSQLL SKANEVVKRQ EGEIYALQRA LEEKEEELEI SKATKKLEQE KLRETEANLK KQTEEWLIAQ
301: DEVNKLKEET VKRLGEANET MEDFMKVKKL LTDVRFELIS SREALVFSRE QMEEKELLLE KQLEELEEQR KSVLSYMQSL RDAHTEVESE RVKLRVVEAK
401: NFALEREISV QKELLEDLRE ELQKEKPLLE LAMHDISVIQ DELYKKANAF QVSQNLLQEK ESSLVEAKLE IQHLKSEQAS LELLLQEKDE ELAEARNKLG
501: EVNQEVTELK ALMISREDQL MEATEMLKEK DVHLHRIEGE LGSSKLKVTE AEMVVERIAE LTNRLLMSTT NGQNQNAMRI NNEISIDSMQ QPLEKPHDDY
601: GMENKRLVME LSFTRENLRM KEMEVLAVQR ALTFKDEEIN VVMGRLEAKE QELKKLKEET INDSEDLKVL YALAQERVGE KTMGDLAIEM LQLEAANLEV
701: EAATSALQKL AKMSTELLTQ ADMSIEADTT HTVMPERGYS EGSNECLGEV KTEVVRLWSL TEKLLENAGI VAGTSTCMEG VIL

Arabidopsis Description

Myosin heavy chain-related protein [Source:UniProtKB/TrEMBL;Acc:Q8H1E5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.