Factsheet for VIT_08s0058g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_15s0048g00270.t01
VIT_17s0000g01560.t01
VIT_17s0000g06020.t01
VIT_17s0000g08940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08780.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT3G08780.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT3G08780.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT3G08780.1	VIT_17s0000g08940.t01	AT3G54170.1	21798944
AT3G08780.1	VIT_15s0048g00270.t01	AT4G00150.1	21798944
AT3G08780.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76029	Soybean	nucleus, plastid	54.58	54.4
PGSC0003DMT400044093	Potato	cytosol	54.25	53.04
AT3G08780.1	Thale cress	cytosol	53.59	52.4
Solyc09g015180.2.1	Tomato	cytosol	53.59	52.4
CDY36008	Canola	nucleus	51.63	50.32
Bra029720.1-P	Field mustard	nucleus	51.31	49.84
CDY27973	Canola	nucleus	51.31	49.84
KRH65583	Soybean	plastid	33.33	49.76
Os04t0479300-01	Rice	extracellular, nucleus	31.7	35.53
TraesCS5A01G151000.1	Wheat	cytosol, nucleus, plasma membrane	32.68	35.21
TraesCS5D01G156000.1	Wheat	cytosol	32.68	35.21
TraesCS5B01G149500.1	Wheat	cytosol	32.35	34.86
EES07862	Sorghum	plastid	32.03	34.51
Os07t0540200-01	Rice	cytosol, nucleus, plasma membrane	32.68	34.25
Zm00001d044621_P001	Maize	extracellular	30.72	32.75
KXG22792	Sorghum	endoplasmic reticulum, peroxisome, plastid	29.09	32.13
TraesCS2A01G325500.1	Wheat	plastid	28.43	31.87
Zm00001d025308_P001	Maize	plastid	16.01	31.61
TraesCS2D01G337200.1	Wheat	extracellular	28.43	30.74
TraesCS2B01G356400.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	27.12	30.29
HORVU2Hr1G082810.2	Barley	cytosol	28.76	29.43
TraesCS1A01G382300.1	Wheat	cytosol	22.55	28.05
TraesCS1B01G407600.1	Wheat	endoplasmic reticulum, plasma membrane	22.55	26.24

Protein Annotations

EntrezGene:100267162	wikigene:100267162	MapMan:35.2	ProteinID:CCB44814	ProteinID:CCB44814.1	UniProt:F6GXT4
InterPro:FAM175	InterPro:FAM175_plant	EMBL:FN594967	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0031593	EntrezGene:LOC100267162
wikigene:LOC100267162	PRINTS:PR02051	PRINTS:PR02054	PANTHER:PTHR31728	PANTHER:PTHR31728:SF1	UniParc:UPI00015CC05F
ArrayExpress:VIT_08s0058g00530	EnsemblPlantsGene:VIT_08s0058g00530	EnsemblPlants:VIT_08s0058g00530.t01	unigene:Vvi.21345	RefSeq:XP_002263634	RefSeq:XP_002263634.1
RefSeq:XP_010653385.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:9628422..9631661

Molecular Weight (calculated)

33410.5 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.201

Length

306 amino acids

Sequence
(BLAST)

001: MDDLPLQKIQ ISGPTLASMI QRFSTALGDV DGLLFGHVSH IAPSSLSDDD PLGSSSDPST FVATVSGFLC SGTIDSFYDS SGQVNVLALR RLLADRVPLR
101: SLIGWFSGRR RSPLRPSLRE SSVTACLSTK AQFSFPIENS LSNFRPSLFL LFASPLSDQV IHTHEYKAYQ YCLSSQTLEP KSIDIVNIGP AFRGHYGSFS
201: PSSPFPSLAC DLRGSPMAED DTDATRVSKA QAQRELDTCA EGVQIGSLRR LMGSEATNYT AGLEDLYEKM LAKLDSLARL VEKTSAKVHE QESHNVKLRY
301: KVAGYD

Best Arabidopsis Sequence Match ( AT3G08780.1 )
(BLAST)

001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR

Arabidopsis Description

AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.