Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G382300.1 | Wheat | cytosol | 78.71 | 84.15 |
| TraesCS2B01G356400.1 | Wheat | endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 61.6 | 59.12 |
| Os04t0479300-01 | Rice | extracellular, nucleus | 48.29 | 46.52 |
| TraesCS5B01G149500.1 | Wheat | cytosol | 47.15 | 43.66 |
| VIT_08s0058g00530.t01 | Wine grape | cytosol | 26.24 | 22.55 |
| KRH76029 | Soybean | nucleus, plastid | 25.86 | 22.15 |
| KRH65583 | Soybean | plastid | 16.73 | 21.46 |
| PGSC0003DMT400044093 | Potato | cytosol | 25.1 | 21.09 |
| Solyc09g015180.2.1 | Tomato | cytosol | 25.1 | 21.09 |
| AT3G08780.1 | Thale cress | cytosol | 24.71 | 20.77 |
| CDY36008 | Canola | nucleus | 24.71 | 20.7 |
| CDY27973 | Canola | nucleus | 24.71 | 20.63 |
| Bra029720.1-P | Field mustard | nucleus | 24.33 | 20.32 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G407600.1 | EnsemblPlantsGene:TraesCS1B01G407600 | InterPro:FAM175 | PANTHER:PTHR31728 | PANTHER:PTHR31728:SF1 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:634779042..634782235
Molecular Weight (calculated)
28427.4 Da
IEP (calculated)
9.080
GRAVY (calculated)
-0.018
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAADADAAK LSVSIQAFAA LLDCCAAAGV DCDGILLSRA ALPPSFSDDD PAPTLPIYVT GHSSLARPSA LSNALSCFKP CFPARTGTAT VGFFSSRHSA
101: CTMRRPSMRE AAVARSLSKS LALAHPVMFL LLAPSVATDL SIYSFAHRAF LLVDSRLVPT SLTIVNVGPR YRGQYQCHTF APESPMPRLP PQPANIGEQA
201: TEEEEMYSGM LRRLDRLAQE AEEGNKLLFR QKNKNLLAWR KIAGLKTRSK GRDLVLSKGV EYL
101: CTMRRPSMRE AAVARSLSKS LALAHPVMFL LLAPSVATDL SIYSFAHRAF LLVDSRLVPT SLTIVNVGPR YRGQYQCHTF APESPMPRLP PQPANIGEQA
201: TEEEEMYSGM LRRLDRLAQE AEEGNKLLFR QKNKNLLAWR KIAGLKTRSK GRDLVLSKGV EYL
001: MDDLSLEKIE ISGPTLASLI QRASSSPSDV DGLIFGQIHR IVSSNLSDDS PADIASSSSS SDQIVATVTS FICSGKTVSF YDPLGRVDSR RIDSLRVDSP
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
101: DHLIGWFSAR RKTANRPSMR ELAVTSSLSS QFHLPIEDLQ NPRSMNMASS VFFLLTMPLT DQCIHTHEYR AYQFRSSKQR LEPRSVGIVN IGPAFRGHYG
201: SFSPKSGFPP LICELSSSAM SVDCDESSLS AKKQSAKDQK EIDALAEGFQ VGELKRLVGA EAANYTGGIE EMYERMLAKI ESLASDVEKS SARVFQQEKH
301: NRKLRNRVAR IGR
Arabidopsis Description
AT3g08780/F17O14_25 [Source:UniProtKB/TrEMBL;Acc:Q8RY09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.