Factsheet for TraesCS4A01G482000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G054400.1
TraesCS5A01G124000.1
TraesCS5B01G062000.3
TraesCS5B01G123600.1
TraesCS5D01G065700.1
TraesCS5D01G131900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	TraesCS5A01G124000.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5B01G123600.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5D01G131900.1	AT1G72030.1	21798944
AT4G00150.1	TraesCS5A01G054400.1	AT1G60490.1	21798944
AT4G00150.1	TraesCS5B01G062000.3	AT1G60490.1	21798944
AT4G00150.1	TraesCS5D01G065700.1	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G011400.1	Wheat	plastid	92.45	94.36
TraesCS7A01G014200.1	Wheat	plastid	93.74	87.61
Os06t0105350-00	Rice	plastid	62.43	69.33
Zm00001d045589_P001	Maize	cytosol	60.41	65.6
EER87695	Sorghum	cytosol, plastid	60.96	64.52
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	11.97	35.71
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	40.88	35.52
GSMUA_Achr11P...	Banana	cytosol	38.67	35.29
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	40.15	34.22
TraesCS6A01G247200.1	Wheat	mitochondrion	43.83	33.81
GSMUA_Achr5P20860_001	Banana	cytosol	33.89	33.21
VIT_02s0154g00400.t01	Wine grape	cytosol	29.65	31.45
CDX95633	Canola	cytosol	31.49	30.87
Bra003311.1-P	Field mustard	nucleus	28.55	30.63
GSMUA_Achr8P11160_001	Banana	cytosol	37.57	30.58
Solyc08g078800.1.1	Tomato	plastid	26.52	30.38
AT4G00150.1	Thale cress	cytosol, plastid	30.94	30.11
CDY63062	Canola	cytosol, plastid	30.94	29.89
CDY63061	Canola	cytosol, plastid	30.94	29.89
Bra037319.1-P	Field mustard	cytosol, plastid	30.94	29.89
CDX89065	Canola	nucleus	30.02	29.64
CDY48367	Canola	cytosol	30.57	29.43
CDX83398	Canola	cytosol	31.49	28.98
GSMUA_Achr11P...	Banana	cytosol	36.46	28.61
CDY67934	Canola	cytosol	31.49	28.6
Bra000375.1-P	Field mustard	cytosol	31.68	28.34
CDY56248	Canola	cytosol	31.31	28.29
AT3G60630.1	Thale cress	cytosol	31.86	27.77
AT2G45160.1	Thale cress	cytosol	32.04	27.19
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	37.2	26.06
Solyc01g090950.2.1	Tomato	cytosol	36.83	26.01
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	36.46	25.78
KRH76167	Soybean	cytosol	34.44	25.37
KRH65380	Soybean	cytosol	34.07	25.27
KRH75351	Soybean	cytosol	34.25	25.0
KRG88927	Soybean	cytosol	34.07	24.83
PGSC0003DMT400012104	Potato	plastid	31.49	24.43
TraesCS4A01G209800.1	Wheat	cytosol	20.26	23.21
TraesCS4A01G088500.1	Wheat	cytosol	20.26	19.61

Protein Annotations

EnsemblPlants:TraesCS4A01G482000.1	EnsemblPlantsGene:TraesCS4A01G482000	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF43
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr4A:+:737479622..737481253

Molecular Weight (calculated)

56476.8 Da

IEP (calculated)

6.468

GRAVY (calculated)

-0.077

Length

543 amino acids

Sequence
(BLAST)

001: MITTMSSSCS GLGGGGAAAN SKRKSPEPTS VLYNRSPSPP TSSSAHSSEP PPISAEDWDA VLLSSGGCDH AMAAAAHGTR EDSSFLRWIM DAGYADGDGD
101: AFGFKGPAPF DPPSFLTPPP LHPPPEEAAF SLPQLPPQLS VPAQPQPQQG QVHFPVSSAA AGAVREGDLE PQAAVDELLE AARRADAGDP AGAREILARL
201: NHRLPSPPAP PGHPPLLRAA ALLRDALLHR LLPPAAGAGA GSVLSPLDVA LKLAAHKALA DASPTVQFAG FTATQAFLDA LGAGARRVHV VDLDVGFGGH
301: WPPLMQELAH HWRRTAAPST PPPSLKVTAL VSPGSRHPLE LHLTQESLAR FAAELGIPFE FAAVAFDPSS ASPPPGLSAA PDDAVAVHIT VGTETSGPTP
401: ASLRVVRQLR PAVVVCVDHG CDRADLPLPS HALNVLRSCA ALVESLDTPG ASLDVAAKVE QFILRPRAER LVAGAGGEKL PPWRSTFASA GLAPLQLSNA
501: AEAQAECLLR RTANHGFHVE KHQSALALWW QRSELVSVSA WRC

Best Arabidopsis Sequence Match ( AT2G45160.1 )
(BLAST)

001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC

Arabidopsis Description

SCL27Scarecrow-like protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJM8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.