Factsheet for Zm00001d045589_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	Zm00001d019343_P001	AT1G72030.1	21798944
AT4G00150.1	Zm00001d050219_P004	AT1G60490.1	21798944
AT4G00150.1	Zm00001d013027_P002	AT5G66720.1	21798944
AT4G00150.1	Zm00001d034575_P001	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87695	Sorghum	cytosol, plastid	87.4	85.19
TraesCS7D01G011400.1	Wheat	plastid	66.4	62.41
Os06t0105350-00	Rice	plastid	60.0	61.35
TraesCS4A01G482000.1	Wheat	plastid	65.6	60.41
TraesCS7A01G014200.1	Wheat	plastid	66.0	56.8
Zm00001d022034_P001	Maize	cytosol	29.0	47.39
Zm00001d047957_P001	Maize	cytosol	12.0	46.51
Zm00001d035873_P001	Maize	cytosol, plastid	24.0	41.96
Zm00001d018956_P001	Maize	plastid	12.0	41.96
Zm00001d027292_P001	Maize	peroxisome	36.4	37.84
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	13.6	37.36
Zm00001d027569_P001	Maize	plastid	21.8	34.82
Zm00001d029855_P001	Maize	mitochondrion	44.4	34.42
GSMUA_Achr11P...	Banana	cytosol	40.4	33.95
GSMUA_Achr5P20860_001	Banana	cytosol	36.8	33.21
Zm00001d042852_P001	Maize	cytosol	16.2	32.93
VIT_02s0154g00400.t01	Wine grape	cytosol	33.6	32.81
Solyc08g078800.1.1	Tomato	plastid	30.4	32.07
CDY63061	Canola	cytosol, plastid	35.4	31.49
CDY63062	Canola	cytosol, plastid	35.4	31.49
Bra037319.1-P	Field mustard	cytosol, plastid	35.4	31.49
AT4G00150.1	Thale cress	cytosol, plastid	35.0	31.36
Zm00001d002718_P001	Maize	cytosol	44.6	30.93
Zm00001d022162_P001	Maize	cytosol	10.2	30.91
CDX95633	Canola	cytosol	33.8	30.51
GSMUA_Achr8P11160_001	Banana	cytosol	40.6	30.43
Zm00001d026158_P001	Maize	cytosol	43.6	30.36
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	21.4	30.23
Zm00001d031615_P001	Maize	cytosol	16.4	30.15
Zm00001d051387_P001	Maize	cytosol	42.2	29.8
CDX83398	Canola	cytosol	34.0	28.81
Bra003311.1-P	Field mustard	nucleus	29.0	28.66
CDX89065	Canola	nucleus	31.2	28.36
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	40.0	28.33
CDY48367	Canola	cytosol	31.8	28.19
Bra000375.1-P	Field mustard	cytosol	34.2	28.17
GSMUA_Achr11P...	Banana	cytosol	38.6	27.89
CDY67934	Canola	cytosol	32.6	27.26
AT3G60630.1	Thale cress	cytosol	33.6	26.97
CDY56248	Canola	cytosol	32.4	26.96
AT2G45160.1	Thale cress	cytosol	34.0	26.56
PGSC0003DMT400012104	Potato	plastid	36.0	25.71
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	39.4	25.42
KRH76167	Soybean	cytosol	36.6	24.83
KRH65380	Soybean	cytosol	36.0	24.59
Solyc01g090950.2.1	Tomato	cytosol	37.4	24.32
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	37.2	24.22
KRH75351	Soybean	cytosol	36.0	24.19
KRG88927	Soybean	cytosol	36.0	24.16
Zm00001d053163_P001	Maize	cytosol	20.0	21.14
Zm00001d041919_P001	Maize	cytosol, peroxisome, plastid	19.6	19.92
Zm00001d028526_P001	Maize	cytosol	19.8	17.55

Protein Annotations

EnsemblPlants:Zm00001d045589_P001	EnsemblPlants:Zm00001d045589_T001	EnsemblPlantsGene:Zm00001d045589	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF43	PFAM:PF03514	PFscan:PS50985	ProteinID:AQL02681.1	SEG:seg
UniParc:UPI0008436DFC	UniProt:A0A1D6NX76	MapMan:15.5.12	:	:	:

Description

GRAS-transcription factor 32Scarecrow-like protein 6

Coordinates

chr9:-:27423699..27425201

Molecular Weight (calculated)

52766.9 Da

IEP (calculated)

5.849

GRAVY (calculated)

0.024

Length

500 amino acids

Sequence
(BLAST)

001: MSELPDGGAG GNGQDEAAAF ASPAKRLRRS PALEPTSVLY NRSPSPPTSS SLVSSAAPEP PPISAEDWEA VLSGGDMAAP PAAARSQDAS FLRWIMDADA
101: QVDAFDPFLP CQETAVVEPF LQPQLPLPVA DDLEPGATVD ELLEAVRRAD AGDSTGAREI LARLNHRLPS PPGHPHPPIL RAAAHLRDAL LRVLVTSAPA
201: PAAVSTTPLD VALKVAAHRA LADASPTVQF ANFTSTQALL DALGTARRVH VVDLDVGFGG RWAPLMQELA LQWRRAPVSP LPPPCLKVTA LVSPGSSAHP
301: LELHLTHQGL TRFAADLGIS FEFNAVAFDP LDPLPPTGLS VAPGDAVAVH LSVGSGVPSA ATLRVVKQLR PAVVVCVDHG CHRGDLPLSH HALSVVRSSA
401: AFLESLDAAG APADAVARLE EYVVRPRVER LLLGDRMPPW RTMLDSAGFA PVQLSNAAEA QAECLVRRTP TPGFHVEKRQ AALALRWQDS ELVMVSAWRC

Best Arabidopsis Sequence Match ( AT3G60630.1 )
(BLAST)

001: MPLPFEQFQG KGVLGFLDSS SSPGYKIWAN PEKLHGRVEE DLCFVVNNGG FSEPTSVLDS VRSPSPFVSS STTTLSSSHG GPSGGGAAAA TFSGADGKCD
101: QMGFEDLDGV LSGGSPGQEQ SIFRLIMAGD VVDPGSEFVG FDIGSGSDPV IDNPNPLFGY GFPFQNAPEE EKFQISINPN PGFFSDPPSS PPAKRLNSGQ
201: PGSQHLQWVF PFSDPGHESH DPFLTPPKIA GEDQNDQDQS AVIIDQLFSA AAELTTNGGD NNPVLAQGIL ARLNHNLNNN NDDTNNNPKP PFHRAASYIT
301: EALHSLLQDS SLSPPSLSPP QNLIFRIAAY RAFSETSPFL QFVNFTANQT ILESFEGFDR IHIVDFDIGY GGQWASLIQE LAGKRNRSSS APSLKITAFA
401: SPSTVSDEFE LRFTEENLRS FAGETGVSFE IELLNMEILL NPTYWPLSLF RSSEKEAIAV NLPISSMVSG YLPLILRFLK QISPNVVVCS DRSCDRNNDA
501: PFPNGVINAL QYYTSLLESL DSGNLNNAEA ATSIERFCVQ PSIQKLLTNR YRWMERSPPW RSLFGQCGFT PVTLSQTAET QAEYLLQRNP MRGFHLEKRQ
601: SSSPSLVLCW QRKELVTVSA WKC

Arabidopsis Description

SCL22Scarecrow-like protein 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9M000]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.