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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
iPSORT:plastid
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 Zm00001d019343_P001 AT1G72030.1 21798944
AT4G00150.1 Zm00001d050219_P004 AT1G60490.1 21798944
AT4G00150.1 Zm00001d013027_P002 AT5G66720.1 21798944
AT4G00150.1 Zm00001d034575_P001 AT5G66720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d047957_P001 Maize cytosol 74.13 82.17
Zm00001d022162_P001 Maize cytosol 41.96 36.36
Zm00001d042852_P001 Maize cytosol 58.04 33.74
Zm00001d031615_P001 Maize cytosol 57.34 30.15
Zm00001d035873_P001 Maize cytosol, plastid 43.36 21.68
Zm00001d002023_P001 Maize cytosol, mitochondrion, peroxisome, plastid 52.45 21.19
Os10t0551200-01 Rice cytosol 55.94 20.1
Zm00001d027569_P001 Maize plastid 39.86 18.21
Zm00001d029855_P001 Maize mitochondrion 67.83 15.04
Zm00001d027292_P001 Maize peroxisome 47.55 14.14
EER91968 Sorghum cytosol, mitochondrion 62.24 13.91
TraesCS1B01G223400.1 Wheat cytosol, plastid 57.34 13.14
HORVU1Hr1G053510.1 Barley plastid 56.64 13.06
TraesCS1D01G212800.1 Wheat cytosol 56.64 13.04
TraesCS1A01G209400.1 Wheat mitochondrion, plastid 56.64 12.96
Zm00001d045589_P001 Maize cytosol 41.96 12.0
Zm00001d022034_P001 Maize cytosol 25.17 11.76
VIT_02s0154g00400.t01 Wine grape cytosol 33.57 9.38
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 11.89 9.34
GSMUA_Achr11P... Banana cytosol 37.06 8.91
Solyc08g078800.1.1 Tomato plastid 29.37 8.86
Zm00001d002718_P001 Maize cytosol 44.06 8.74
GSMUA_Achr5P20860_001 Banana cytosol 32.87 8.48
Zm00001d051387_P001 Maize cytosol 39.16 7.91
Bra003311.1-P Field mustard nucleus 27.27 7.71
Zm00001d026158_P001 Maize cytosol 38.46 7.66
GSMUA_Achr8P11160_001 Banana cytosol 35.66 7.65
GSMUA_Achr11P... Banana cytosol 34.97 7.23
AT4G00150.1 Thale cress cytosol, plastid 27.97 7.17
Zm00001d017513_P001 Maize cytosol, mitochondrion, nucleus 34.97 7.08
CDX95633 Canola cytosol 27.27 7.04
CDX83398 Canola cytosol 28.67 6.95
Bra037319.1-P Field mustard cytosol, plastid 27.27 6.94
CDY63061 Canola cytosol, plastid 27.27 6.94
CDY63062 Canola cytosol, plastid 27.27 6.94
CDY48367 Canola cytosol 26.57 6.74
CDX89065 Canola nucleus 25.87 6.73
AT3G60630.1 Thale cress cytosol 28.67 6.58
CDY56248 Canola cytosol 27.27 6.49
Bra000375.1-P Field mustard cytosol 27.27 6.43
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 34.27 6.38
Solyc01g090950.2.1 Tomato cytosol 34.27 6.37
CDY67934 Canola cytosol 26.57 6.35
AT2G45160.1 Thale cress cytosol 27.27 6.09
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 32.87 6.06
PGSC0003DMT400012104 Potato plastid 29.37 6.0
KRH75351 Soybean cytosol 30.77 5.91
KRG88927 Soybean cytosol 30.77 5.91
KRH76167 Soybean cytosol 29.37 5.7
KRH65380 Soybean cytosol 28.67 5.6
Zm00001d053163_P001 Maize cytosol 16.78 5.07
Zm00001d041919_P001 Maize cytosol, peroxisome, plastid 16.78 4.88
Zm00001d028526_P001 Maize cytosol 15.38 3.9
Protein Annotations
EnsemblPlants:Zm00001d018956_P001EnsemblPlants:Zm00001d018956_T001EnsemblPlantsGene:Zm00001d018956GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRAS
PANTHER:PTHR31636PANTHER:PTHR31636:SF125PFAM:PF03514ProteinID:ONM51725.1SEG:segUniParc:UPI000221320A
UniProt:A0A1D6HTM0MapMan:15.5.12::::
Description
Scarecrow-like protein 6
Coordinates
chr7:+:10470180..10470708
Molecular Weight (calculated)
14697.7 Da
IEP (calculated)
6.335
GRAVY (calculated)
0.500
Length
143 amino acids
Sequence
(BLAST)
001: MSLGPPAAST CWTWTSACAR SGVADAGAGA ALPAATLKVT ALVSPASHHS LELNLIHENL SGFARELGVF LQFVAYNVDA LDPAELVAIT SDDAVAVHLR
101: VGSAHVTTMS TVLRLVKRLG VKVVVSVDRG CDLSALGGEI YTG
Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.