Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60630.1 | CDX68289 | AT1G72030.1 | 21798944 |
| AT3G60630.1 | CDY36666 | AT1G72030.1 | 21798944 |
| AT3G60630.1 | CDX82548 | AT3G13227.1 | 21798944 |
| AT3G60630.1 | CDY66552 | AT3G13227.1 | 21798944 |
| AT3G60630.1 | CDY70591 | AT3G13227.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89065 | Canola | nucleus | 91.13 | 93.45 |
| AT3G60630.1 | Thale cress | cytosol | 80.85 | 73.19 |
| CDX95633 | Canola | cytosol | 58.33 | 59.39 |
| CDX83398 | Canola | cytosol | 59.57 | 56.95 |
| CDY56248 | Canola | cytosol | 59.57 | 55.91 |
| CDY67934 | Canola | cytosol | 58.87 | 55.52 |
| CDY63062 | Canola | cytosol, plastid | 39.01 | 39.15 |
| CDY63061 | Canola | cytosol, plastid | 39.01 | 39.15 |
| Zm00001d022034_P001 | Maize | cytosol | 20.74 | 38.24 |
| KRH76167 | Soybean | cytosol | 44.86 | 34.33 |
| KRH75351 | Soybean | cytosol | 45.21 | 34.27 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 46.63 | 34.24 |
| Solyc01g090950.2.1 | Tomato | cytosol | 46.63 | 34.2 |
| KRH65380 | Soybean | cytosol | 44.15 | 34.02 |
| KRG88927 | Soybean | cytosol | 44.86 | 33.96 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 46.45 | 33.81 |
| Os10t0551200-01 | Rice | cytosol | 23.76 | 33.67 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 31.56 | 32.13 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 27.13 | 32.08 |
| Zm00001d045589_P001 | Maize | cytosol | 28.19 | 31.8 |
| Zm00001d047957_P001 | Maize | cytosol | 7.27 | 31.78 |
| TraesCS7D01G011400.1 | Wheat | plastid | 29.96 | 31.77 |
| Os06t0105350-00 | Rice | plastid | 27.48 | 31.7 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 29.61 | 31.63 |
| GSMUA_Achr11P... | Banana | cytosol | 33.33 | 31.6 |
| EER87695 | Sorghum | cytosol, plastid | 28.55 | 31.38 |
| TraesCS4A01G482000.1 | Wheat | plastid | 29.43 | 30.57 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 34.57 | 29.24 |
| Zm00001d027292_P001 | Maize | peroxisome | 24.82 | 29.11 |
| CDX72597 | Canola | cytosol | 23.76 | 29.07 |
| Os03t0103400-01 | Rice | cytosol | 24.29 | 28.9 |
| TraesCS7A01G014200.1 | Wheat | plastid | 29.43 | 28.57 |
| CDX75590 | Canola | cytosol | 24.47 | 28.34 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 14.36 | 28.32 |
| CDY13032 | Canola | cytosol | 24.65 | 28.19 |
| CDY43895 | Canola | cytosol | 24.47 | 28.11 |
| HORVU1Hr1G053510.1 | Barley | plastid | 30.67 | 27.9 |
| EER91968 | Sorghum | cytosol, mitochondrion | 31.56 | 27.81 |
| CDX69238 | Canola | cytosol | 24.11 | 27.81 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 30.5 | 27.7 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 30.67 | 27.68 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 30.5 | 27.56 |
| Zm00001d022162_P001 | Maize | cytosol | 7.98 | 27.27 |
| GSMUA_Achr11P... | Banana | cytosol | 33.16 | 27.02 |
| Zm00001d029855_P001 | Maize | mitochondrion | 30.85 | 26.98 |
| Zm00001d018956_P001 | Maize | plastid | 6.74 | 26.57 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 29.08 | 25.75 |
| Os04t0555000-01 | Rice | cytosol | 32.45 | 25.74 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 29.26 | 25.7 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 29.26 | 25.7 |
| Zm00001d002718_P001 | Maize | cytosol | 32.62 | 25.52 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 31.74 | 25.46 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 28.72 | 25.39 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 31.38 | 25.29 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 32.27 | 25.28 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 31.56 | 25.18 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 31.38 | 25.14 |
| Zm00001d026158_P001 | Maize | cytosol | 31.91 | 25.07 |
| Zm00001d027569_P001 | Maize | plastid | 13.83 | 24.92 |
| Os02t0662700-01 | Rice | cytosol | 31.21 | 24.82 |
| Zm00001d051387_P001 | Maize | cytosol | 30.85 | 24.58 |
| Os02t0663100-01 | Rice | cytosol | 31.03 | 24.48 |
| EES05768 | Sorghum | cytosol | 31.03 | 24.44 |
| Zm00001d042852_P001 | Maize | cytosol | 10.11 | 23.17 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 28.72 | 22.95 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 14.36 | 22.88 |
| CDY45672 | Canola | cytosol | 17.55 | 20.25 |
| Zm00001d031615_P001 | Maize | cytosol | 9.4 | 19.49 |
| OQU85680 | Sorghum | mitochondrion | 22.34 | 19.47 |
| CDY17336 | Canola | cytosol | 17.2 | 19.44 |
Protein Annotations
| MapMan:15.5.12 | GO:A0A078IEB3 | UniProt:A0A078IEB3 | EnsemblPlants:CDY48367 | ProteinID:CDY48367 | ProteinID:CDY48367.1 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00089357001 | InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF11 | InterPro:TF_GRAS | UniParc:UPI0004EE2E03 | SEG:seg | : | : |
Description
BnaC04g22080DBnaC04g22080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEB3]
Coordinates
chrLK032768:-:40586..42488
Molecular Weight (calculated)
61555.6 Da
IEP (calculated)
4.528
GRAVY (calculated)
-0.179
Length
564 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLPFEELQG LGFSYGTRED LCCVVGVNNG SSEPTSVLDS SRSPSPFLSS STTTLSSSHG GPGAAAAGKC NQMAFEDLDG VLSGSPGQEQ SIFRLIMSGD
101: VVDPGSEFMG FDPGSGSDPN PLFGYGFPLD EPPPEEEDLK FQITTDPNPC FFSGGSSPPA KRLNSGQPVS HQWGFPFSDP GHPFLAPPPK LAGTETTAVI
201: TEQLFNAAAE LTGTDNNNPV LAQGILARLN QNLNNNLHNP KPPFQRAALY VTESLQSLLQ PSLPPPHTLL LKIAAYRAFS ETSPFLQFVN FTANQTILES
301: LERFDRIRIV DFDVGFGGQW SSLIQELANR SSSAPLSSLK ITSFSSPSTV SDEFELRFTE ENLRAFAGET GVTFEMEMLN METLLNPPLS LLRSSDKEAI
401: AVNLPISSVI SGYLPLILRF LKQISPNVVV CSDTIPDAPF PNAVVDALHY YTSLLESLES PNSSSQEAVA SIERFCVQPW IHRLLTNRYR WMDKSPPWIS
501: LFGQCGFTPV AMSQTAETQA EYLLQRNPMR GFHLEKRQSS SFTTSSLVLC WQKKELVAVS AWKC
101: VVDPGSEFMG FDPGSGSDPN PLFGYGFPLD EPPPEEEDLK FQITTDPNPC FFSGGSSPPA KRLNSGQPVS HQWGFPFSDP GHPFLAPPPK LAGTETTAVI
201: TEQLFNAAAE LTGTDNNNPV LAQGILARLN QNLNNNLHNP KPPFQRAALY VTESLQSLLQ PSLPPPHTLL LKIAAYRAFS ETSPFLQFVN FTANQTILES
301: LERFDRIRIV DFDVGFGGQW SSLIQELANR SSSAPLSSLK ITSFSSPSTV SDEFELRFTE ENLRAFAGET GVTFEMEMLN METLLNPPLS LLRSSDKEAI
401: AVNLPISSVI SGYLPLILRF LKQISPNVVV CSDTIPDAPF PNAVVDALHY YTSLLESLES PNSSSQEAVA SIERFCVQPW IHRLLTNRYR WMDKSPPWIS
501: LFGQCGFTPV AMSQTAETQA EYLLQRNPMR GFHLEKRQSS SFTTSSLVLC WQKKELVAVS AWKC
001: MPLPFEQFQG KGVLGFLDSS SSPGYKIWAN PEKLHGRVEE DLCFVVNNGG FSEPTSVLDS VRSPSPFVSS STTTLSSSHG GPSGGGAAAA TFSGADGKCD
101: QMGFEDLDGV LSGGSPGQEQ SIFRLIMAGD VVDPGSEFVG FDIGSGSDPV IDNPNPLFGY GFPFQNAPEE EKFQISINPN PGFFSDPPSS PPAKRLNSGQ
201: PGSQHLQWVF PFSDPGHESH DPFLTPPKIA GEDQNDQDQS AVIIDQLFSA AAELTTNGGD NNPVLAQGIL ARLNHNLNNN NDDTNNNPKP PFHRAASYIT
301: EALHSLLQDS SLSPPSLSPP QNLIFRIAAY RAFSETSPFL QFVNFTANQT ILESFEGFDR IHIVDFDIGY GGQWASLIQE LAGKRNRSSS APSLKITAFA
401: SPSTVSDEFE LRFTEENLRS FAGETGVSFE IELLNMEILL NPTYWPLSLF RSSEKEAIAV NLPISSMVSG YLPLILRFLK QISPNVVVCS DRSCDRNNDA
501: PFPNGVINAL QYYTSLLESL DSGNLNNAEA ATSIERFCVQ PSIQKLLTNR YRWMERSPPW RSLFGQCGFT PVTLSQTAET QAEYLLQRNP MRGFHLEKRQ
601: SSSPSLVLCW QRKELVTVSA WKC
101: QMGFEDLDGV LSGGSPGQEQ SIFRLIMAGD VVDPGSEFVG FDIGSGSDPV IDNPNPLFGY GFPFQNAPEE EKFQISINPN PGFFSDPPSS PPAKRLNSGQ
201: PGSQHLQWVF PFSDPGHESH DPFLTPPKIA GEDQNDQDQS AVIIDQLFSA AAELTTNGGD NNPVLAQGIL ARLNHNLNNN NDDTNNNPKP PFHRAASYIT
301: EALHSLLQDS SLSPPSLSPP QNLIFRIAAY RAFSETSPFL QFVNFTANQT ILESFEGFDR IHIVDFDIGY GGQWASLIQE LAGKRNRSSS APSLKITAFA
401: SPSTVSDEFE LRFTEENLRS FAGETGVSFE IELLNMEILL NPTYWPLSLF RSSEKEAIAV NLPISSMVSG YLPLILRFLK QISPNVVVCS DRSCDRNNDA
501: PFPNGVINAL QYYTSLLESL DSGNLNNAEA ATSIERFCVQ PSIQKLLTNR YRWMERSPPW RSLFGQCGFT PVTLSQTAET QAEYLLQRNP MRGFHLEKRQ
601: SSSPSLVLCW QRKELVTVSA WKC
Arabidopsis Description
SCL22Scarecrow-like protein 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9M000]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.