Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13227.1 | CDX72718 | AT4G39050.1 | 21798944 |
| AT3G13227.1 | CDX90305 | AT4G39050.1 | 21798944 |
| AT3G13227.1 | CDY12116 | AT4G39050.1 | 21798944 |
| AT3G13227.1 | CDY22394 | AT4G39050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001494.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX82548 | Canola | nucleus | 100.0 | 100.0 |
| CDY70591 | Canola | cytosol | 79.31 | 83.64 |
| AT3G13227.1 | Thale cress | cytosol | 78.45 | 81.98 |
Protein Annotations
| EnsemblPlants:CDY66552 | EnsemblPlantsGene:GSBRNA2T00054529001 | ncoils:Coil | PANTHER:PTHR33132 | PANTHER:PTHR33132:SF29 | ProteinID:CDY66552 |
| ProteinID:CDY66552.1 | SEG:seg | UniParc:UPI0002540877 | UniProt:A0A078JME9 | MapMan:35.2 | : |
Description
BnaCnng51400DBnaA03g32730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JME9]
Coordinates
chrLK035318:+:10583..10933
Molecular Weight (calculated)
12446.0 Da
IEP (calculated)
10.901
GRAVY (calculated)
-0.837
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKEKEEAK RRTMMNKIKL KETQQEISQE DVKRQEAYNM SPRVRGGGGP AGMVKSSSVR LSCLCAPTTH PGSFRCRYHR RNAGLGMSRG ISVPTNLSML
101: AGGGGGSNST SGSPKS
101: AGGGGGSNST SGSPKS
001: MEGKEEEAKR RMMMKIKLKE TEADVSQDDI KRQEAYNMSP RVRRGGGGGG GSVGMSKSSS VRQNCLCAPT THPGSFRCRY HRRNAGLGMS RGTSVPSNLS
101: MLAGGDSNSP K
101: MLAGGDSNSP K
Arabidopsis Description
At3g13227 [Source:UniProtKB/TrEMBL;Acc:Q9LHL1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.